Literature DB >> 29143182

Noncoding RNAs in the Regulation of Pluripotency and Reprogramming.

Vladimir V Sherstyuk1,2,3,4, Sergey P Medvedev1,2,3,4, Suren M Zakian5,6,7,8.   

Abstract

Pluripotent stem cells have great potential for developmental biology and regenerative medicine. Embryonic stem cells, which are obtained from blastocysts, and induced pluripotent stem cells, which are generated by the reprogramming of somatic cells, are two main types of pluripotent cells. It is important to understand the regulatory network that controls the pluripotency state and reprogramming process. Various types of noncoding RNAs (ncRNAs) have emerged as substantial components of regulatory networks. The most studied class of ncRNAs in the context of pluripotency and reprogramming is microRNAs (miRNAs). In addition to canonical microRNAs, other types of small RNAs with miRNA-like function are expressed in PSCs. Another class of ncRNAs, long ncRNAs, are also involved in pluripotency and reprogramming regulation. Thousands of ncRNAs have been annotated to date, and a significant number of the molecules do not have known function. In this review, we briefly summarized recent advances in this field and described existing genome-editing approaches to study ncRNA functions.

Entities:  

Keywords:  CRISPR/Cas9; Genome editing; Long noncoding RNA; MicroRNA; Noncoding RNA; Pluripotency; Pluripotent stem cells; Reprogramming

Mesh:

Substances:

Year:  2018        PMID: 29143182     DOI: 10.1007/s12015-017-9782-9

Source DB:  PubMed          Journal:  Stem Cell Rev Rep        ISSN: 2629-3277            Impact factor:   5.739


  162 in total

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Journal:  Hum Mol Genet       Date:  2005-04-15       Impact factor: 6.150

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Journal:  Methods       Date:  2008-01       Impact factor: 3.608

3.  Proteomic and phosphoproteomic comparison of human ES and iPS cells.

Authors:  Douglas H Phanstiel; Justin Brumbaugh; Craig D Wenger; Shulan Tian; Mitchell D Probasco; Derek J Bailey; Danielle L Swaney; Mark A Tervo; Jennifer M Bolin; Victor Ruotti; Ron Stewart; James A Thomson; Joshua J Coon
Journal:  Nat Methods       Date:  2011-09-11       Impact factor: 28.547

4.  Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells.

Authors:  Jichang Wang; Gangcai Xie; Manvendra Singh; Avazeh T Ghanbarian; Tamás Raskó; Attila Szvetnik; Huiqiang Cai; Daniel Besser; Alessandro Prigione; Nina V Fuchs; Gerald G Schumann; Wei Chen; Matthew C Lorincz; Zoltán Ivics; Laurence D Hurst; Zsuzsanna Izsvák
Journal:  Nature       Date:  2014-10-15       Impact factor: 49.962

5.  So much "junk" DNA in our genome.

Authors:  S Ohno
Journal:  Brookhaven Symp Biol       Date:  1972

6.  Highly efficient miRNA-mediated reprogramming of mouse and human somatic cells to pluripotency.

Authors:  Frederick Anokye-Danso; Chinmay M Trivedi; Denise Juhr; Mudit Gupta; Zheng Cui; Ying Tian; Yuzhen Zhang; Wenli Yang; Peter J Gruber; Jonathan A Epstein; Edward E Morrisey
Journal:  Cell Stem Cell       Date:  2011-04-08       Impact factor: 24.633

7.  The let-7/LIN-41 pathway regulates reprogramming to human induced pluripotent stem cells by controlling expression of prodifferentiation genes.

Authors:  Kathleen A Worringer; Tim A Rand; Yohei Hayashi; Salma Sami; Kazutoshi Takahashi; Koji Tanabe; Megumi Narita; Deepak Srivastava; Shinya Yamanaka
Journal:  Cell Stem Cell       Date:  2013-11-14       Impact factor: 24.633

8.  A latent pro-survival function for the mir-290-295 cluster in mouse embryonic stem cells.

Authors:  Grace X Y Zheng; Arvind Ravi; J Mauro Calabrese; Lea A Medeiros; Oktay Kirak; Lucas M Dennis; Rudolf Jaenisch; Christopher B Burge; Phillip A Sharp
Journal:  PLoS Genet       Date:  2011-05-05       Impact factor: 5.917

9.  Megabase-scale deletion using CRISPR/Cas9 to generate a fully haploid human cell line.

Authors:  Patrick Essletzbichler; Tomasz Konopka; Federica Santoro; Doris Chen; Bianca V Gapp; Robert Kralovics; Thijn R Brummelkamp; Sebastian M B Nijman; Tilmann Bürckstümmer
Journal:  Genome Res       Date:  2014-11-04       Impact factor: 9.043

10.  SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells.

Authors:  Lorena Pantano; Xavier Estivill; Eulàlia Martí
Journal:  Nucleic Acids Res       Date:  2009-12-11       Impact factor: 16.971

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  12 in total

1.  A circular RNA map for human induced pluripotent stem cells of foetal origin.

Authors:  Mario Barilani; Alessandro Cherubini; Valeria Peli; Francesca Polveraccio; Valentina Bollati; Federica Guffanti; Alessandro Del Gobbo; Cristiana Lavazza; Silvia Giovanelli; Nicola Elvassore; Lorenza Lazzari
Journal:  EBioMedicine       Date:  2020-06-20       Impact factor: 8.143

2.  Skullcapflavone I protects cardiomyocytes from hypoxia-caused injury through up-regulation of lincRNA-ROR.

Authors:  Zhenxiao Zhang; Hui Li; Mingyang Liu; Jianshuai He; Xiaotian Zhang; Yuehua Chen
Journal:  Int J Immunopathol Pharmacol       Date:  2019 Jan-Dec       Impact factor: 3.219

3.  Genome-wide discovery and characterization of long noncoding RNAs in patients with multiple myeloma.

Authors:  Minqiu Lu; Ying Hu; Yin Wu; Huixing Zhou; Yuan Jian; Ying Tian; Wenming Chen
Journal:  BMC Med Genomics       Date:  2019-10-16       Impact factor: 3.063

Review 4.  Emerging Roles of Long Non-coding RNAs in Chronic Neuropathic Pain.

Authors:  Wei Wu; Xiaojun Ji; Yang Zhao
Journal:  Front Neurosci       Date:  2019-10-18       Impact factor: 4.677

5.  Serum lncRNA LOXL1-AS1 is a diagnostic and prognostic marker for epithelial ovarian cancer.

Authors:  Chun-Na Liu; Hai-Yan Zhang
Journal:  J Gene Med       Date:  2020-06-13       Impact factor: 4.565

Review 6.  Induced Pluripotency: A Powerful Tool for In Vitro Modeling.

Authors:  Romana Zahumenska; Vladimir Nosal; Marek Smolar; Terezia Okajcekova; Henrieta Skovierova; Jan Strnadel; Erika Halasova
Journal:  Int J Mol Sci       Date:  2020-11-24       Impact factor: 5.923

7.  Combined RNA-seq and RAT-seq mapping of long noncoding RNAs in pluripotent reprogramming.

Authors:  Zhonghua Du; Lin Jia; Yichen Wang; Cong Wang; Xue Wen; Jingcheng Chen; Yanbo Zhu; Dehai Yu; Lei Zhou; Naifei Chen; Shilin Zhang; Ilkay Celik; Ferhat Ay; Sujun Gao; Songling Zhang; Wei Li; Andrew R Hoffman; Jiuwei Cui; Ji-Fan Hu
Journal:  Sci Data       Date:  2018-11-20       Impact factor: 6.444

8.  Genome-wide interaction target profiling reveals a novel Peblr20-eRNA activation pathway to control stem cell pluripotency.

Authors:  Cong Wang; Lin Jia; Yichen Wang; Zhonghua Du; Lei Zhou; Xue Wen; Hui Li; Shilin Zhang; Huiling Chen; Naifei Chen; Jingcheng Chen; Yanbo Zhu; Yuanyuan Nie; Ilkay Celic; Sujun Gao; Songling Zhang; Andrew R Hoffman; Wei Li; Ji-Fan Hu; Jiuwei Cui
Journal:  Theranostics       Date:  2020-01-01       Impact factor: 11.556

9.  Lnc-PFAR facilitates autophagy and exacerbates pancreatic fibrosis by reducing pre-miR-141 maturation in chronic pancreatitis.

Authors:  Tao Zhang; Guangquan Zhang; Wenbo Yang; Hongze Chen; Jisheng Hu; Zhongjie Zhao; Chundong Cheng; Guanqun Li; Yu Xie; Yilong Li; Rui Kong; Yongwei Wang; Gang Wang; Hua Chen; Xue-Wei Bai; Shangha Pan; Bei Sun; Le Li
Journal:  Cell Death Dis       Date:  2021-10-25       Impact factor: 8.469

10.  Characterization of transcript enrichment and detection bias in single-nucleus RNA-seq for mapping of distinct human adipocyte lineages.

Authors:  Anushka Gupta; Farnaz Shamsi; Nicolas Altemose; Gabriel F Dorlhiac; Aaron M Cypess; Andrew P White; Nir Yosef; Mary Elizabeth Patti; Yu-Hua Tseng; Aaron Streets
Journal:  Genome Res       Date:  2022-01-18       Impact factor: 9.438

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