| Literature DB >> 29141595 |
MohammadMehdi Kafashan1,2, Shoko Ryu1, Mitchell J Hargis3,4, Osvaldo Laurido-Soto3, Debra E Roberts3,5, Akshay Thontakudi1, Lawrence Eisenman3, Terrance T Kummer6, ShiNung Ching7,8.
Abstract
BACKGROUND: Rapidly determining the causes of a depressed level of consciousness (DLOC) including coma is a common clinical challenge. Quantitative analysis of the electroencephalogram (EEG) has the potential to improve DLOC assessment by providing readily deployable, temporally detailed characterization of brain activity in such patients. While used commonly for seizure detection, EEG-based assessment of DLOC etiology is less well-established. As a first step towards etiological diagnosis, we sought to distinguish focal and diffuse causes of DLOC through assessment of temporal dynamics within EEG signals.Entities:
Keywords: Classification; Coma; Depressed level of consciousness; Electroencephalogram
Mesh:
Year: 2017 PMID: 29141595 PMCID: PMC5688694 DOI: 10.1186/s12883-017-0977-0
Source DB: PubMed Journal: BMC Neurol ISSN: 1471-2377 Impact factor: 2.474
Summary of study population
| Classification | Diffuse | Focal |
|---|---|---|
|
|
| |
| Male | 6 (32%) | 12 (57%) |
| Female | 13 (68%) | 9 (43%) |
| Age | 58.32 (23, 90) | 58.42 (18, 87) |
| GCS at time of EEG | 5.74 (3, 8) | 5.6 (3, 9) |
| Injuries Observed | ||
| Vascular | 7 | 14 |
| Diffuse structural | 3 | 0 |
| Brainstem lesion | 0 | 6 |
| Traumatic | 2 | 1 |
| Toxic/Metabolic | 7 | 0 |
List of features. List of 25 features extracted from EEG data
| Feature ID | Description |
|---|---|
| 1–2 | Maximum, minimum eigenvalues of the estimated |
| 3 | Number of absolute eigenvalues of matrix |
| 4–6 | Statistical properties: variance, skewness, and kurtosis |
| 7–11 | Power in the delta, theta, alpha, beta, and gamma bands |
| 12 | Ratio of power in beta and gamma bands to total power |
| 13 | Ratio of power in delta and theta bands to total power |
| 14 | Hurst exponent [ |
| 15 | Hjorth parameters [ |
| 16–19 | Equidistant mutual information, Equiprobable mutual information, and the first minimums of both types of mutual information [ |
| 20 | Bicorrelation |
| 21 | Median frequency [ |
| 22–24 | Spearman autocorrelation, Pearson autocorrelation, and partial autocorrelation |
| 25 | Composite permutation entropy index (CPEI) [ |
Fig. 1Schematic illustrating sliding window to define epoch and trial in EGG data with bipolar montage. The EEG channel number on the vertical axes are ordered as: FP1-F7, F7-T7, T7-P7, P7-O1, Fp1-F3, F3-C3, C3-P3, P3-O1, Fz-Cz, Cz-Pz, Fp2-F4, F4-C4, C4-P4, P4-O2, Fp2-F8, F8-T8, T8-P8, P8-O2
Fig. 2a Ranking of features by importance (see Methods). b Correlation between features, noting in particular substantial redundancy in the entropic features 15–24
Fig. 3a (left) Principal component decomposition of primary features. Each row in the matrix depicts the composition of a PC. The colorbar references the weight of each primary feature to the respective PCs. (right) Rows are ranked according to PC importance. b Box plots comparing the distributions of PC1 (entropic features), PC4 (kurtosis, bicorrelation) and PC2 (delta, alpha, theta, delta/theta ratio) for focal and diffuse cases
Averaged classification performance before applying PCA on initial features
| Epoch length | Number of epochs in a trial | Accuracy (Hard) | Accuracy (Soft) | Specificity | Sensitivity |
|---|---|---|---|---|---|
| 1 s | 10 | 0.51 | 0.52 | 0.42 | 0.66 |
| 20 | 0.53 | 0.54 | 0.45 | 0.68 | |
| 40 | 0.53 | 0.53 | 0.41 | 0.69 | |
| 100 | 0.53 | 0.53 | 0.41 | 0.70 | |
| All | 0.57 | 0.57 | 0.49 | 0.69 | |
| 5 s | 10 | 0.50 | 0.49 | 0.44 | 0.67 |
| 20 | 0.50 | 0.50 | 0.41 | 0.68 | |
| 40 | 0.52 | 0.51 | 0.44 | 0.67 | |
| 100 | 0.58 | 0.54 | 0.51 | 0.66 | |
| All | 0.57 | 0.57 | 0.46 | 0.72 | |
| 20 s | 10 | 0.51 | 0.51 | 0.41 | 0.69 |
| 20 | 0.52 | 0.51 | 0.38 | 0.70 | |
| 40 | 0.53 | 0.53 | 0.51 | 0.64 | |
| All | 0.59 | 0.59 | 0.46 | 0.77 |
Classification results are for different epoch length (1 s, 5 s, and 20s) and different number of epochs in a trial (10, 20, 40, 100, and all epochs). All the results are averaged classifier performance over 500 random training and testing sets. In each realization, the subjects in training and testing sets are different
Averaged classification performance after applying PCA on initial features
| Epoch length | Number of epochs in a trial | Accuracy (Hard) | Accuracy (Soft) | Specificity | Sensitivity |
|---|---|---|---|---|---|
| 1 s | 10 | 0.63 | 0.63 | 0.57 | 0.68 |
| 20 | 0.64 | 0.62 | 0.59 | 0.68 | |
| 40 | 0.65 | 0.62 | 0.59 | 0.68 | |
| 100 | 0.65 | 0.63 | 0.59 | 0.69 | |
| All | 0.62 | 0.62 | 0.55 | 0.67 | |
| 5 s | 10 | 0.63 | 0.61 | 0.57 | 0.67 |
| 20 | 0.65 | 0.64 | 0.60 | 0.68 | |
| 40 | 0.65 | 0.62 | 0.60 | 0.69 | |
| 100 | 0.68 | 0.65 | 0.57 | 0.71 | |
| All | 0.65 | 0.62 | 0.61 | 0.66 | |
| 20 s | 10 | 0.63 | 0.59 | 0.55 | 0.66 |
| 20 | 0.63 | 0.59 | 0.56 | 0.65 | |
| 40 | 0.64 | 0.61 | 0.59 | 0.68 | |
| All | 0.64 | 0.60 | 0.61 | 0.67 |
Classification results are for different epoch length (1 s, 5 s, and 20s) and different number of epochs in a trial (10, 20, 40, 100, and all epochs). All the results are averaged classifier performance over 500 random training and testing sets. In each realization, the subjects in training and testing sets are different
Classification performance after applying PCA on initial features with first 13 subjects as testing set
| Epoch length | Number of epochs in a trial | Accuracy (Hard) | Accuracy (Soft) | Specificity | Sensitivity |
|---|---|---|---|---|---|
| 1 s | 10 | 0.69 | 0.69 | 0.66 | 0.71 |
| 20 | 0.76 | 0.68 | 0.65 | 0.69 | |
| 40 | 0.69 | 0.71 | 0.66 | 0.73 | |
| 100 | 0.69 | 0.69 | 0.66 | 0.73 | |
| All | 0.69 | 0.67 | 0.52 | 0.77 | |
| 5 s | 10 | 0.76 | 0.69 | 0.62 | 0.73 |
| 20 | 0.69 | 0.71 | 0.70 | 0.73 | |
| 40 | 0.76 | 0.70 | 0.66 | 0.71 | |
| 100 | 0.69 | 0.69 | 0.66 | 0.73 | |
| All | 0.61 | 0.61 | 0.52 | 0.73 | |
| 20 s | 10 | 0.61 | 0.61 | 0.51 | 0.71 |
| 20 | 0.69 | 0.65 | 0.63 | 0.69 | |
| 40 | 0.61 | 0.67 | 0.66 | 0.71 | |
| All | 0.61 | 0.61 | 0.62 | 0.60 |
Classification results are for different epoch length (1 s, 5 s, and 20s) and different number of epochs in a trial (10, 20, 40, 100, and all epochs)