| Literature DB >> 29140476 |
Elisé P Wright1, Julian L Huppert2, Zöe A E Waller1,3.
Abstract
Entities:
Year: 2017 PMID: 29140476 PMCID: PMC5728391 DOI: 10.1093/nar/gkx1178
Source DB: PubMed Journal: Nucleic Acids Res ISSN: 0305-1048 Impact factor: 16.971
Thermal and pH stability of the genomic i-motif candidate oligonucleotides used in this study
| pH 7.0 | |||||
|---|---|---|---|---|---|
| Notation | Bases | Sequence 5′ - 3′ |
|
|
|
| AC017019.1 | 28 | CCC-CCC-TCC-CCC-CCT-CCC-CCC-TCC-CCC-C | 27.9 ± 0.6 | 18.0 ± 0.2 | 7.1 |
| AC018878.3 | 26 | CCC-CCA-CCC-CCA-GCC-CCC-TTT-CCC-CC | 18.1 ± 0.2 | 7.5 ± 0.5 | 7.1 |
| ATXN2L | 24 | CCC-CCC-CCC-CCC-CCC-CCC-CCC-CCC | 23.7 ± 1.0 | 22.5 ± 0.6 | 7.0 |
| CAMK2G | 50 | CCC-CCA-GGC-CCC-GCC-AGT-CCC-CCC-CCC-CGC-CCG-GCC-CCC-GGC-CCG-CCC-CC | 13.0 ± 1.2 | 11.3 ± 0.7 | 6.9 |
| DAP | 29 | CCC-CCG-CCC-CCG-CCC-CCG-CCC-CCG-CCC-CC | 24.7 ± 0.5 | 22.0 ± 0.4 | 7.0 |
| DRP2 | 70 | CCC-CCT-CTT-CCC-CTC-TCC-CCC-TCT-CCC-CCT-CTC-TCC-CTC-TTC-CCC-CTC-TCC-TTG-TCT-CCTTCT-CTC-CCC-C | 4.5 ± 0.7 | 6.5 ± 0.7 | 6.0 |
| DUX4L22 | 41 | CCC-CCG-AAA-CGC-GCC-CCC-CTC-CCC-CCT-CCC-CCC-TCT-CCC-CC | 29.2 ± 0.2 | 14.2 ± 0.2 | 7.1 |
| GH2 | 42 | CCC-CCA-CCC-CCA-CCC-CCA-TCC-CCA-CGC-CCC-GCC-CCC-GCC-CCC | 22.7 ± 1.0 | 15.2 ± 0.9 | 7.1 |
| HIC2 | 74 | CCC-CCG-GGA-CAG-GGA-CCC-TGG-CCC-CCC-CCG-ACA-GGC-TGA-CGC-CCA-CCC-CCT-CAA-ACT-CTG-GTG-GAC-TTA-CCC-CC | 7.5 ± 2.1 | 7.8 ± 2.0 | 6.4 |
| HOXC10 | 24 | CCC-CCA-CCC-CCA-CCC-CCA-CCC-CCC | 17.7 ± 0.8 | 14.0 ± 0.2 | 7.1 |
| HOXD10 | 26 | CCC-CCC-CCC-CCT-CCC-CCG-CGG-CCC-CC | 10.2 ± 0.9 | 5.2 ± 0.2 | 7.1 |
| JAZF1 | 31 | CCC-CCC-CCG-CCC-CCG-CCC-CCG-CCC-TCC-CCC-C | 20.4 ± 0.4 | 18.5 ± 0.6 | 7.1 |
| MSMO1 | 23 | CCC-CCG-CCC-CCG-CCC-CCG-CCC-CC | 16.6 ± 0.5 | 15.9 ± 0.4 | 6.7 |
| NFATC1 | 45 | CCC-CCG-TTT-CCC-CCG-CCA-GCC-CCA-GCG-CCC-CCC-TGC-CCG-GCC-CCC | 23.2 ± 0.0/28.8 ± 0.5 | 18.8 ± 0.6 | 7.1 |
| PIM1 | 45 | CCC-CCG-ACG-CGC-CCC-CCA-ACA-CAC-AAA-CCC-CCA-GAA-TCC-GCC-CCC | 29.4 ± 1.9 | 5.1 ± 0.2 | 7.0 |
| PLCB2 | 36 | CCC-CCG-CCT-CTT-CTG-GAG-GCC-CCC-GCC-CCC-ACC-CCC | 15.0 ± 0.2 | 13.2 ± 0.2 | 7.0 |
| QSOX1 | 25 | CCC-CCG-CCC-CCG-AGC-CCC-CGC-CCC-C | 20.1 ± 0.2 | 11.9 ± 0.4 | 7.1 |
| RAE1 | 116 | CCC-CCC-GCC-CCC-CCC-GCC-CCC-CCG-CGC-CGC-CCC-CCC-CCG-CCC-CCC-GCC-CCC-GTC-CCC-CCG-CCC-CCC-CCG-CCC-CCC-CCG-CCC-CCC-GTC-CCC-CCG-CCC-CCC-CGC-CCC-CCC-GTC-CCC-CC | 27.1 ± 7.4 | 13.6 ± 6.3 | 6.8 |
| RUNX1–1 | 31 | CCC-CCC-CCG-CAC-CCC-TTC-CCC-CGG-CCC-CCC-C | 14.3 ± 0.9/25.0 ± 0.4 | 9.8 ± 0.4 | 6.7 |
| RUNX1–2 | 36 | CCC-CCC-TCC-CCC-TGC-CTC-TCC-CTC-CCC-CCT-TTC-CCC | 13.2 ± 0.2/24.4 ± 0.2 | 10.1 ± 0.0 | 6.5 |
| RUNX1–3 | 32 | CCC-CCC-TTT-CCC-CTG-CCC-CCC-CTG-CCT-CCC-CC | 10.7 ± 0.6/26.2 ± 0.0 | 9.7 ± 0.6 | 6.7 |
| SHANK1b | 28 | CCC-CCC-TCC-CCC-CAC-CCC-CCA-CCC-CCC-C | 22.5 ± 0.6 | 12.0 ± 0.0 | 7.1 |
| SHANK3 | 80 | CCC-CCG-CCT-CCG-GCG-CAG-CCC-CCT-CGC-CAC-CCC-CGC-TTC-CCT-CCC-GTC-TCA-GGC-CCC-CTC-CCC-CCG-CCG-CCC-CCG-CCC-CC | 18.3 ± 1.9 | 5.6 ± 1.0 | 6.6 |
| SHANK3b | 79 | CCC-CCC-GCA-CCG-AGG-CCT-AGG-ACT-CCC-CCC-CCC-AAC-CCC-GTC-ACA-GCC-CCC-CAG-ACC-CCC-GCC-CCG-TGG-CTC-GGC-CCC-C | 12.6 ± 3.6 | 4.8 ± 0.7 | 6.5 |
| SNORD112 | 36 | CCC-CCC-CCC-GCC-CCC-CAC-CCC-CCC-ACC-CCC-CCC-CCC | 25.8 ± 0.5 | 15.9 ± 0.4 | 7.2 |
| SOX1 | 57 | CCC-CCT-GCA-GGC-CCC-CCT-GCG-CCT-CCC-CCC-CCC-CGC-CAC-TGG-CGC-CTG-GCT-TCC-CCC | 9.0 ± 0.2 | 6.5 ± 0.5 | 6.9 |
| STX17 | 33 | CCC-CCG-CCC-CCG-CCC-CCG-CCC-CGC-AGG-GCC-CCC | 19.5 ± 0.6 | 15.0 ± 0.2 | 7.0 |
| Tandem Repeat (LA16c-OS12.2) | 57 | CCC-CCC-GTG-TCG-CTG-TTC-CCC-CCG-TGT-CGC-TGT-TCC-CCC-CGT-GTC-GCT-GTT-CCC-CCC | 9.4 ± 1.5/31.6 ± 0.6 | 6.7 ± 0.6 | 6.6 |
| TRABD | 23 | CCC-CCG-CCC-CCC-CCC-CCC-CCC-CC | 21.3 ± 0.2 | 19.3 ± 0.2 | 6.9 |
| WNT7A | 48 | CCC-CCG-CCC-CTC-CCT-CCT-TTC-CCC-CGT-CCC-TCC-CCC-GCC-CCC-TCC-CCC | 22.7 ± 2.5 | 16.1 ± 0.0 | 7.1 |
| ZBTB7B | 58 | CCC-CCC-ATC-CCT-CCC-CTC-CCT-CCC-CCC-GCC-CCT-GCC-ACC-CCC-CAA-ACT-CCC-CCC-CCC-C | 25.5 ± 1.3 | 10.0 ± 0.2 | 7.1 |
| ZFP41 | 52 | CCC-CCA-GCC-CCC-GCC-GAC-CCC-CAG-CTC-CCG-CCT-CCG-CCG-ACC-CCC-AGC-CCC-C | 21.7 ± 0.7/35.6 ± 0.4 | 17.4 ± 0.4 | 7.0 |
| ZNF480 | 23 | CCC-CCG-CCC-CCG-CCC-CCG-CCC-CC | 17.1 ± 0.0 | 15.2 ± 0.2 | 6.7 |