Literature DB >> 29134597

Essential Steps in Characterizing Bacteriophages: Biology, Taxonomy, and Genome Analysis.

Ramy Karam Aziz1, Hans-Wolfgang Ackermann2, Nicola K Petty3, Andrew M Kropinski4.   

Abstract

Because of the rise in antimicrobial resistance there has been a significant increase in interest in phages for therapeutic use. Furthermore, the cost of sequencing phage genomes has decreased to the point where it is being used as a teaching tool for genomics. Unfortunately, the quality of the descriptions of the phage and its annotation frequently are substandard. The following chapter is designed to help people working on phages, particularly those new to the field, to accurately describe their newly isolated viruses.

Entities:  

Keywords:  Annotation; CDS; Electron microscopy; Genomes; Locus tag; ORF; Phage; Promoter; Software; Taxonomy; Terminator

Mesh：

Substances：

Year:  2018        PMID： 29134597     DOI： 10.1007/978-1-4939-7343-9_15

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  9 in total

Review 1.  Pharmacologically Aware Phage Therapy: Pharmacodynamic and Pharmacokinetic Obstacles to Phage Antibacterial Action in Animal and Human Bodies.

Authors:  Krystyna Dąbrowska; Stephen T Abedon
Journal:  Microbiol Mol Biol Rev       Date:  2019-10-30       Impact factor: 11.056

2.  Systematic exploration of Escherichia coli phage-host interactions with the BASEL phage collection.

Authors:  Enea Maffei; Aisylu Shaidullina; Marco Burkolter; Yannik Heyer; Fabienne Estermann; Valentin Druelle; Patrick Sauer; Luc Willi; Sarah Michaelis; Hubert Hilbi; David S Thaler; Alexander Harms
Journal:  PLoS Biol       Date:  2021-11-16       Impact factor: 8.029

Review 3.  Phages for Phage Therapy: Isolation, Characterization, and Host Range Breadth.

Authors:  Paul Hyman
Journal:  Pharmaceuticals (Basel)       Date:  2019-03-11

4.  Characterization of Two Pseudomonas aeruginosa Viruses vB_PaeM_SCUT-S1 and vB_PaeM_SCUT-S2.

Authors:  Yangyijun Guo; Ping Chen; Zhanglin Lin; Tingting Wang
Journal:  Viruses       Date:  2019-04-01       Impact factor: 5.048

5.  Diversity of Sinorhizobium (Ensifer) meliloti Bacteriophages in the Rhizosphere of Medicago marina: Myoviruses, Filamentous and N4-Like Podovirus.

Authors:  María Teresa Cubo; Cynthia Alías-Villegas; Eduardo Balsanelli; Dany Mesa; Emanuel de Souza; María Rosario Espuny
Journal:  Front Microbiol       Date:  2020-01-24       Impact factor: 5.640

6.  Learning From Mistakes: The Role of Phages in Pandemics.

Authors:  Ahlam Alsaadi; Beatriz Beamud; Maheswaran Easwaran; Fatma Abdelrahman; Ayman El-Shibiny; Majed F Alghoribi; Pilar Domingo-Calap
Journal:  Front Microbiol       Date:  2021-03-17       Impact factor: 5.640

7.  Isolation and Characterisation of the Bundooravirus Genus and Phylogenetic Investigation of the Salasmaviridae Bacteriophages.

Authors:  Cassandra R Stanton; Daniel T F Rice; Michael Beer; Steven Batinovic; Steve Petrovski
Journal:  Viruses       Date:  2021-08-06       Impact factor: 5.048

8.  Characterizing Phage Genomes for Therapeutic Applications.

Authors:  Casandra W Philipson; Logan J Voegtly; Matthew R Lueder; Kyle A Long; Gregory K Rice; Kenneth G Frey; Biswajit Biswas; Regina Z Cer; Theron Hamilton; Kimberly A Bishop-Lilly
Journal:  Viruses       Date:  2018-04-10       Impact factor: 5.048

9.  The Sequence of Two Bacteriophages with Hypermodified Bases Reveals Novel Phage-Host Interactions.

Authors:  Andrew M Kropinski; Dann Turner; John H E Nash; Hans-Wolfgang Ackermann; Erika J Lingohr; Richard A Warren; Kenneth C Ehrlich; Melanie Ehrlich
Journal:  Viruses       Date:  2018-04-24       Impact factor: 5.048
  9 in total

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