Literature DB >> 29134593

Analyzing Genome Termini of Bacteriophage Through High-Throughput Sequencing.

Xianglilan Zhang1, Yahui Wang2, Yigang Tong2.   

Abstract

High-throughput sequencing (HTS) is an effective tool for bacteriophage genome and its termini analysis. HTS technology parallelizes the sequencing process, producing thousands to millions of reads concurrently. Terminal information of a bacteriophage genome is important and basic knowledge for understanding the biology of the bacteriophage. We have created a high-occurrence reads as termini theory and developed practical methods to determine the bacteriophage genome termini, which is based on the large data of HTS. With this method, the termini of the bacteriophage genome can be efficiently and reliably identified as a by-product of bacteriophage genome sequencing, by solely analyzing the sequence statistics of the raw sequencing data (reads), without any further lab experiments.

Entities:  

Keywords:  Bacteriophage; Genome termini; High Occurrence Read Termini theory; High frequency read sequence (HFS); High-throughput sequencing (HTS)

Mesh:

Substances:

Year:  2018        PMID: 29134593     DOI: 10.1007/978-1-4939-7343-9_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  5 in total

1.  vB_BcM_Sam46 and vB_BcM_Sam112, members of a new bacteriophage genus with unusual small terminase structure.

Authors:  Olesya A Kazantseva; Emma G Piligrimova; Andrey M Shadrin
Journal:  Sci Rep       Date:  2021-06-09       Impact factor: 4.379

2.  Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae.

Authors:  Amina Nazir; Zhaoxia Dong; Jin Liu; Rana Adnan Tahir; Madiha Rasheed; Hong Qing; Donghai Peng; Yigang Tong
Journal:  Arch Virol       Date:  2021-02-14       Impact factor: 2.574

3.  Phage Annotation Guide: Guidelines for Assembly and High-Quality Annotation.

Authors:  Dann Turner; Evelien M Adriaenssens; Igor Tolstoy; Andrew M Kropinski
Journal:  Phage (New Rochelle)       Date:  2021-12-16

4.  Characterizing Phage Genomes for Therapeutic Applications.

Authors:  Casandra W Philipson; Logan J Voegtly; Matthew R Lueder; Kyle A Long; Gregory K Rice; Kenneth G Frey; Biswajit Biswas; Regina Z Cer; Theron Hamilton; Kimberly A Bishop-Lilly
Journal:  Viruses       Date:  2018-04-10       Impact factor: 5.048

5.  Isolation and Characterization of the Novel Phages vB_VpS_BA3 and vB_VpS_CA8 for Lysing Vibrio parahaemolyticus.

Authors:  Meiyan Yang; Yongjian Liang; Shixuan Huang; Jumei Zhang; Jing Wang; Hanfang Chen; Yuanming Ye; Xiangyang Gao; Qingping Wu; Zhiyuan Tan
Journal:  Front Microbiol       Date:  2020-02-21       Impact factor: 5.640

  5 in total

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