Literature DB >> 29129490

RNAlater® is a viable storage option for avian influenza sampling in logistically challenging conditions.

Michelle Wille1, Hong Yin2, Åke Lundkvist3, Juan Xu4, Shaman Muradrasoli5, Josef D Järhult6.   

Abstract

Surveillance of wild birds is critical in monitoring for highly pathogenic avian influenza A viruses (AIVs). However, a successful surveillance regime requires proper treatment of samples in the field - rapid placement of samples in -80°C and subsequent maintenance of cold-chain. Given the logistical difficulties of this, many avian taxa and/or geographic locations are not sampled, or, when sampled may result in false negatives due to poor sample treatment in the field. Here, we assessed the utility of RNAlater® as a stabilization agent for AIV sampling. We found no difference in real time PCR performance between virus transport media at optimal conditions and RNAlater® at -80°C, -20°C, 4°C or room temperature up to two weeks, at either low or high virus load. Not only was RNAlater® useful in comparison of spiked samples or those from duck experiments, it was employed successfully in a field study of backyard birds in China. We detected AIV in cloacal and oropharyngeal samples from chickens and a sample with a low Cq was successfully subtyped as H9, although sample storage conditions were suboptimal. Thus, despite limitations in downstream characterization such virus isolation and typing, RNAlater® is a viable option for AIV sampling under logistically challenging circumstances.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  China; Influenza A virus; RNA preservative; RNAlater(®); Storage conditions; VTM

Mesh:

Substances:

Year:  2017        PMID: 29129490     DOI: 10.1016/j.jviromet.2017.11.004

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  4 in total

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2.  Suitability of RNALater solution as a tissue-preserving reagent for immunohistochemical analysis.

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3.  Nonrandom RNAseq gene expression associated with RNAlater and flash freezing storage methods.

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  4 in total

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