Literature DB >> 29126564

Information Theory Broadens the Spectrum of Molecular Ecology and Evolution.

W B Sherwin1, A Chao2, L Jost3, P E Smouse4.   

Abstract

Information or entropy analysis of diversity is used extensively in community ecology, and has recently been exploited for prediction and analysis in molecular ecology and evolution. Information measures belong to a spectrum (or q profile) of measures whose contrasting properties provide a rich summary of diversity, including allelic richness (q=0), Shannon information (q=1), and heterozygosity (q=2). We present the merits of information measures for describing and forecasting molecular variation within and among groups, comparing forecasts with data, and evaluating underlying processes such as dispersal. Importantly, information measures directly link causal processes and divergence outcomes, have straightforward relationship to allele frequency differences (including monotonicity that q=2 lacks), and show additivity across hierarchical layers such as ecology, behaviour, cellular processes, and nongenetic inheritance.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Keywords:  Shannon; diversity profile; entropy; gene expression; linkage disequilibrium; selection

Mesh:

Year:  2017        PMID: 29126564     DOI: 10.1016/j.tree.2017.09.012

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  15 in total

1.  Uncovering patterns of the evolution of genomic sequence entropy and complexity.

Authors:  Rafael Plana Simões; Ivan Rodrigo Wolf; Bruno Afonso Correa; Guilherme Targino Valente
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2.  Shannon diversity index: a call to replace the original Shannon's formula with unbiased estimator in the population genetics studies.

Authors:  Maciej K Konopiński
Journal:  PeerJ       Date:  2020-06-29       Impact factor: 2.984

3.  Allele Frequency Difference AFD⁻An Intuitive Alternative to FST for Quantifying Genetic Population Differentiation.

Authors:  Daniel Berner
Journal:  Genes (Basel)       Date:  2019-04-18       Impact factor: 4.096

4.  Clonal diversity and spatial genetic structure in the long-lived herb, Prairie trillium.

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Journal:  PLoS One       Date:  2019-10-21       Impact factor: 3.240

Review 5.  Entropy, or Information, Unifies Ecology and Evolution and Beyond.

Authors:  William Bruce Sherwin
Journal:  Entropy (Basel)       Date:  2018-09-21       Impact factor: 2.524

Review 6.  The Introduction of Entropy and Information Methods to Ecology by Ramon Margalef.

Authors:  William B Sherwin; Narcis Prat I Fornells
Journal:  Entropy (Basel)       Date:  2019-08-15       Impact factor: 2.524

7.  High Genetic Diversity despite Conserved Karyotype Organization in the Giant Trahiras from Genus Hoplias (Characiformes, Erythrinidae).

Authors:  Francisco de M C Sassi; Manolo F Perez; Vanessa Cristina S Oliveira; Geize A Deon; Fernando H S de Souza; Pedro H N Ferreira; Ezequiel A de Oliveira; Terumi Hatanaka; Thomas Liehr; Luiz A C Bertollo; Marcelo de B Cioffi
Journal:  Genes (Basel)       Date:  2021-02-10       Impact factor: 4.096

8.  Coevolution between MHC Class I and Antigen-Processing Genes in Salamanders.

Authors:  Gemma Palomar; Katarzyna Dudek; Magdalena Migalska; J W Arntzen; G Francesco Ficetola; Dušan Jelić; Elizabeth Jockusch; Inigo Martínez-Solano; Masatoshi Matsunami; H Bradley Shaffer; Judit Vörös; Bruce Waldman; Ben Wielstra; Wiesław Babik
Journal:  Mol Biol Evol       Date:  2021-10-27       Impact factor: 16.240

9.  Simulated Disperser Analysis: determining the number of loci required to genetically identify dispersers.

Authors:  Adam P A Cardilini; Craig D H Sherman; William B Sherwin; Lee A Rollins
Journal:  PeerJ       Date:  2018-03-29       Impact factor: 2.984

10.  Genome-wide patterns of differentiation over space and time in the Queensland fruit fly.

Authors:  Ángel-David Popa-Báez; Renee Catullo; Siu Fai Lee; Heng Lin Yeap; Roslyn G Mourant; Marianne Frommer; John A Sved; Emily C Cameron; Owain R Edwards; Phillip W Taylor; John G Oakeshott
Journal:  Sci Rep       Date:  2020-07-01       Impact factor: 4.996

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