Literature DB >> 29126118

Decentralized and reproducible geocoding and characterization of community and environmental exposures for multisite studies.

Cole Brokamp1, Chris Wolfe1, Todd Lingren1, John Harley1, Patrick Ryan1.   

Abstract

OBJECTIVE: Geocoding and characterizing geographic, community, and environmental characteristics of study participants is frequently done in epidemiological studies. However, participant addresses are identifiable protected health information (PHI) and geocoding must be conducted in a Health Insurance Portability and Accountability Act-compliant manner. Our objective was to create a software application for this process that addresses limitations in current approaches.
MATERIALS AND METHODS: We used a containerization platform to create DeGAUSS (Decentralized Geomarker Assessment for Multi-Site Studies), a software application that facilitates reproducible geocoding and geomarker assessment while maintaining the confidentiality of PHI. To validate the software, 215 350 addresses in Hamilton County, Ohio, were geocoded using DeGAUSS, ArcGIS, Google, and SAS and compared to a gold-standard approach. We distributed the DeGAUSS software to sites in an ongoing multisite study (Electronic Medical Records and Genomics, or eMERGE), and individual sites independently geocoded and assigned median census tract-level income and distance to nearest major roadway to their participants' addresses, removed associated PHI, and returned deidentified data.
RESULTS: Within a multisite study, 52 244 study participants' addresses across 5 sites were geocoded with a median distance to roadway of 10 022m and a median census tract income of $57 266, demonstrating the feasibility of DeGAUSS within a multisite study. Compared to other commonly used geocoding platforms, DeGAUSS had similar geocoding and geomarker assessment accuracies.
CONCLUSION: The open source DeGAUSS software overcomes multiple challenges in the use of address data in multisite studies and also serves as a more general reproducible research tool for geocoding and geomarker assessment.
© The Author 2017. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  geocoding; geomarker assessment; multisite study; reproducible research

Year:  2018        PMID: 29126118     DOI: 10.1093/jamia/ocx128

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  20 in total

1.  Muscle Mass Is Linked to Liver Disease Severity in Pediatric Nonalcoholic Fatty Liver Disease.

Authors:  Toshifumi Yodoshi; Sarah Orkin; Ana-Catalina Arce Clachar; Kristin Bramlage; Qin Sun; Lin Fei; Andrew F Beck; Stavra A Xanthakos; Andrew T Trout; Marialena Mouzaki
Journal:  J Pediatr       Date:  2020-08       Impact factor: 4.406

2.  Material community deprivation and hospital utilization during the first year of life: an urban population-based cohort study.

Authors:  Cole Brokamp; Andrew F Beck; Neera K Goyal; Patrick Ryan; James M Greenberg; Eric S Hall
Journal:  Ann Epidemiol       Date:  2018-11-29       Impact factor: 3.797

3.  Incorporating a location-based socioeconomic index into a de-identified i2b2 clinical data warehouse.

Authors:  Bret J Gardner; Jay G Pedersen; Mary E Campbell; James C McClay
Journal:  J Am Med Inform Assoc       Date:  2019-04-01       Impact factor: 4.497

4.  bench4gis: Benchmarking Privacy-aware Geocoding with Open Big Data.

Authors:  Daniel R Harris; Chris Delcher
Journal:  Proc IEEE Int Conf Big Data       Date:  2020-02-24

5.  Pervasive Income-Based Disparities In Inpatient Bed-Day Rates Across Conditions And Subspecialties.

Authors:  Andrew F Beck; Carley L Riley; Stuart C Taylor; Cole Brokamp; Robert S Kahn
Journal:  Health Aff (Millwood)       Date:  2018-04       Impact factor: 6.301

6.  Neighborhood Poverty and Pediatric Intensive Care Use.

Authors:  Erica Andrist; Carley L Riley; Cole Brokamp; Stuart Taylor; Andrew F Beck
Journal:  Pediatrics       Date:  2019-11-01       Impact factor: 7.124

7.  Community Socioeconomic Deprivation and Nonalcoholic Fatty Liver Disease Severity.

Authors:  Sarah Orkin; Cole Brokamp; Toshifumi Yodoshi; Andrew T Trout; Chunyan Liu; Syeda Meryum; Stuart Taylor; Christopher Wolfe; Rachel Sheridan; Aradhna Seth; Mohammad Alfrad Nobel Bhuiyan; Sanita Ley; Ana Catalina Arce-Clachar; Kristin Bramlage; Robert Kahn; Stavra Xanthakos; Andrew F Beck; Marialena Mouzaki
Journal:  J Pediatr Gastroenterol Nutr       Date:  2020-03       Impact factor: 2.839

Review 8.  An Environmental influences on Child Health Outcomes viewpoint of data analysis centers for collaborative study designs.

Authors:  Lisa P Jacobson; Bryan Lau; Diane Catellier; Corette B Parker
Journal:  Curr Opin Pediatr       Date:  2018-04       Impact factor: 2.856

9.  A distributed geospatial approach to describe community characteristics for multisite studies.

Authors:  Patrick H Ryan; Cole Brokamp; Jeff Blossom; Nathan Lothrop; Rachel L Miller; Paloma I Beamer; Cynthia M Visness; Antonella Zanobetti; Howard Andrews; Leonard B Bacharier; Tina Hartert; Christine C Johnson; Dennis Ownby; Robert F Lemanske; Heike Gibson; Weeberb Requia; Brent Coull; Edward M Zoratti; Anne L Wright; Fernando D Martinez; Christine M Seroogy; James E Gern; Diane R Gold
Journal:  J Clin Transl Sci       Date:  2021-02-05

10.  Neighborhood socioeconomic deprivation, racial segregation, and organ donation across 5 states.

Authors:  Sharad I Wadhwani; Cole Brokamp; Erika Rasnick; John C Bucuvalas; Jennifer C Lai; Andrew F Beck
Journal:  Am J Transplant       Date:  2020-08-04       Impact factor: 8.086

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