Literature DB >> 29125748

Optimization of Empirical Force Fields by Parameter Space Mapping: A Single-Step Perturbation Approach.

Martin Stroet1, Katarzyna B Koziara1, Alpeshkumar K Malde1, Alan E Mark1.   

Abstract

A general method for parametrizing atomic interaction functions is presented. The method is based on an analysis of surfaces corresponding to the difference between calculated and target data as a function of alternative combinations of parameters (parameter space mapping). The consideration of surfaces in parameter space as opposed to local values or gradients leads to a better understanding of the relationships between the parameters being optimized and a given set of target data. This in turn enables for a range of target data from multiple molecules to be combined in a robust manner and for the optimal region of parameter space to be trivially identified. The effectiveness of the approach is illustrated by using the method to refine the chlorine 6-12 Lennard-Jones parameters against experimental solvation free enthalpies in water and hexane as well as the density and heat of vaporization of the liquid at atmospheric pressure for a set of 10 aromatic-chloro compounds simultaneously. Single-step perturbation is used to efficiently calculate solvation free enthalpies for a wide range of parameter combinations. The capacity of this approach to parametrize accurate and transferrable force fields is discussed.

Entities:  

Year:  2017        PMID: 29125748     DOI: 10.1021/acs.jctc.7b00800

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  5 in total

1.  Applicability of a thermodynamic cycle approach for a force field parametrization targeting non-aqueous solvation free energies.

Authors:  Andreas Mecklenfeld; Gabriele Raabe
Journal:  J Comput Aided Mol Des       Date:  2019-11-28       Impact factor: 3.686

2.  Improving Force Field Accuracy by Training against Condensed-Phase Mixture Properties.

Authors:  Simon Boothroyd; Owen C Madin; David L Mobley; Lee-Ping Wang; John D Chodera; Michael R Shirts
Journal:  J Chem Theory Comput       Date:  2022-05-09       Impact factor: 6.578

3.  A Minimum Quantum Chemistry CCSD(T)/CBS Data Set of Dimeric Interaction Energies for Small Organic Functional Groups: Heterodimers.

Authors:  Hsing-Hsiang Huang; Yi-Siang Wang; Sheng D Chao
Journal:  ACS Omega       Date:  2022-05-31

4.  Open Force Field Evaluator: An Automated, Efficient, and Scalable Framework for the Estimation of Physical Properties from Molecular Simulation.

Authors:  Simon Boothroyd; Lee-Ping Wang; David L Mobley; John D Chodera; Michael R Shirts
Journal:  J Chem Theory Comput       Date:  2022-05-04       Impact factor: 6.578

5.  Optimization of Protein-Ligand Electrostatic Interactions Using an Alchemical Free-Energy Method.

Authors:  Alexander D Wade; David J Huggins
Journal:  J Chem Theory Comput       Date:  2019-10-23       Impact factor: 6.006

  5 in total

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