Literature DB >> 29125203

Characterization of chalcogen bonding interactions via an in-depth conceptual quantum chemical analysis.

Freija De Vleeschouwer1, Mats Denayer1, Balazs Pinter1, Paul Geerlings1, Frank De Proft1.   

Abstract

The chalcogen bond has been acknowledged as an influential noncovalent inn class="Chemical">teraction (NCI) between an electron-deficient chalcogen (donor) and a Lewis base (acceptor). This work explores the main features of chalcogen bonding through a large-scale computational study on a series of donors and acceptors spanning a wide range in strength and character of this type of bond: (benzo)chalcogenadiazoles (with Ch = Te/Se/S) versus halides and neutral Lewis bases with O, N, and C as donor atoms. We start from Pearson's hard and soft acids and bases (HSAB) principle, where the hard nature of the chalcogen bond is quantified through the molecular electrostatic potential and the soft nature through the Fukui function. The σ-holes are more pronounced when going down in the periodic table and their directionality matches the structural orientation of donors and acceptors in the complexes. The Fukui functions point toward an n→σ*-type interaction. The initial conjectures are further scrutinized using quantum mechanical methods, mostly relating to the systems' electron density. A Ziegler-Rauk energy decomposition analysis shows that electrostatics plays a distinctly larger role for the soft halides than for the hard, uncharged acceptors, associated with the softness matching within the HSAB principle. The natural orbital for chemical valence analysis confirms the n→σ* electron donation mechanism. Finally, the electron density and local density energy at the bond critical point in the quantum theory of atoms in molecules study and the position of the spikes in the reduced density gradient versus density plot in the NCI theory situate the chalcogen bond in the same range as strong hydrogen bonds.
© 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

Entities:  

Keywords:  chalcogen-bonding; density functional theory; energy decomposition analysis; noncovalent interaction; σ-hole

Year:  2017        PMID: 29125203     DOI: 10.1002/jcc.25099

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  5 in total

1.  Noncovalent interactions between benzochalcogenadiazoles and nitrogen bases.

Authors:  Lili Zhang; Yanli Zeng; Xiaoyan Li; Xueying Zhang
Journal:  J Mol Model       Date:  2022-08-06       Impact factor: 2.172

2.  Cooperative chalcogen bonding interactions in confined sites activate aziridines.

Authors:  Haofu Zhu; Pan-Pan Zhou; Yao Wang
Journal:  Nat Commun       Date:  2022-06-22       Impact factor: 17.694

Review 3.  Adaptive responses of sterically confined intramolecular chalcogen bonds.

Authors:  Karuthapandi Selvakumar; Harkesh B Singh
Journal:  Chem Sci       Date:  2018-07-25       Impact factor: 9.825

Review 4.  On the Importance of Pnictogen and Chalcogen Bonding Interactions in Supramolecular Catalysis.

Authors:  Antonio Frontera; Antonio Bauza
Journal:  Int J Mol Sci       Date:  2021-11-21       Impact factor: 5.923

5.  Se⋅⋅⋅O/S and S⋅⋅⋅O Chalcogen Bonds in Small Molecules and Proteins: A Combined CSD and PDB Study.

Authors:  Himansu S Biswal; Akshay Kumar Sahu; Bartomeu Galmés; Antonio Frontera; Deepak Chopra
Journal:  Chembiochem       Date:  2021-11-05       Impact factor: 3.461

  5 in total

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