Literature DB >> 29117700

Optimal updating magnitude in adaptive flat-distribution sampling.

Cheng Zhang1, Justin A Drake1, Jianpeng Ma2, B Montgomery Pettitt1.   

Abstract

We present a study on the optimization of the updating magnitude for a class of free energy methods based on flat-distribution sampling, including the Wang-Landau (WL) algorithm and metadynamics. These methods rely on adaptive construction of a bias potential that offsets the potential of mean force by histogram-based updates. The convergence of the bias potential can be improved by decreasing the updating magnitude with an optimal schedule. We show that while the asymptotically optimal schedule for the single-bin updating scheme (commonly used in the WL algorithm) is given by the known inverse-time formula, that for the Gaussian updating scheme (commonly used in metadynamics) is often more complex. We further show that the single-bin updating scheme is optimal for very long simulations, and it can be generalized to a class of bandpass updating schemes that are similarly optimal. These bandpass updating schemes target only a few long-range distribution modes and their optimal schedule is also given by the inverse-time formula. Constructed from orthogonal polynomials, the bandpass updating schemes generalize the WL and Langfeld-Lucini-Rago algorithms as an automatic parameter tuning scheme for umbrella sampling.

Entities:  

Year:  2017        PMID: 29117700      PMCID: PMC5669982          DOI: 10.1063/1.5008618

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  63 in total

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Authors:  Jerry B Abrams; Mark E Tuckerman
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Authors:  Lianqing Zheng; Mengen Chen; Wei Yang
Journal:  J Chem Phys       Date:  2009-06-21       Impact factor: 3.488

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