Literature DB >> 29117524

Cholesterol Promotes Protein Binding by Affecting Membrane Electrostatics and Solvation Properties.

Milka Doktorova1, Frederick A Heberle2, Richard L Kingston3, George Khelashvili4, Michel A Cuendet4, Yi Wen5, John Katsaras6, Gerald W Feigenson5, Volker M Vogt5, Robert A Dick7.   

Abstract

Binding of the retroviral structural protein Gag to the cellular plasma membrane is mediated by the protein's matrix (MA) domain. Prominent among MA-PM interactions is electrostatic attraction between the positively charged MA domain and the negatively charged plasma membrane inner leaflet. Previously, we reported that membrane association of HIV-1 Gag, as well as purified Rous sarcoma virus (RSV) MA and Gag, depends strongly on the presence of acidic lipids and is enhanced by cholesterol (Chol). The mechanism underlying this enhancement was unclear. Here, using a broad set of in vitro and in silico techniques we addressed molecular mechanisms of association between RSV MA and model membranes, and investigated how Chol enhances this association. In neutron scattering experiments with liposomes in the presence or absence of Chol, MA preferentially interacted with preexisting POPS-rich clusters formed by nonideal lipid mixing, binding peripherally to the lipid headgroups with minimal perturbation to the bilayer structure. Molecular dynamics simulations showed a stronger MA-bilayer interaction in the presence of Chol, and a large Chol-driven increase in lipid packing and membrane surface charge density. Although in vitro MA-liposome association is influenced by disparate variables, including ionic strength and concentrations of Chol and charged lipids, continuum electrostatic theory revealed an underlying dependence on membrane surface potential. Together, these results conclusively show that Chol affects RSV MA-membrane association by making the electrostatic potential at the membrane surface more negative, while decreasing the penalty for lipid headgroup desolvation. The presented approach can be applied to other viral and nonviral proteins.
Copyright © 2017 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2017        PMID: 29117524      PMCID: PMC5685651          DOI: 10.1016/j.bpj.2017.08.055

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   3.699


  53 in total

1.  Plasma membrane rafts play a critical role in HIV-1 assembly and release.

Authors:  A Ono; E O Freed
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-20       Impact factor: 11.205

2.  Insights into protein-protein binding by binding free energy calculation and free energy decomposition for the Ras-Raf and Ras-RalGDS complexes.

Authors:  Holger Gohlke; Christina Kiel; David A Case
Journal:  J Mol Biol       Date:  2003-07-18       Impact factor: 5.469

3.  Models to analyze small-angle neutron scattering from unilamellar lipid vesicles.

Authors:  Norbert Kucerka; John F Nagle; Scott E Feller; Pavol Balgavý
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-05-06

4.  Membrane Binding of the Rous Sarcoma Virus Gag Protein Is Cooperative and Dependent on the Spacer Peptide Assembly Domain.

Authors:  Robert A Dick; Marilia Barros; Danni Jin; Mathias Lösche; Volker M Vogt
Journal:  J Virol       Date:  2015-12-16       Impact factor: 5.103

5.  CHARMM-GUI: a web-based graphical user interface for CHARMM.

Authors:  Sunhwan Jo; Taehoon Kim; Vidyashankara G Iyer; Wonpil Im
Journal:  J Comput Chem       Date:  2008-08       Impact factor: 3.376

6.  A large region within the Rous sarcoma virus matrix protein is dispensable for budding and infectivity.

Authors:  T D Nelle; J W Wills
Journal:  J Virol       Date:  1996-04       Impact factor: 5.103

7.  Comparative lipidomics analysis of HIV-1 particles and their producer cell membrane in different cell lines.

Authors:  Maier Lorizate; Timo Sachsenheimer; Bärbel Glass; Anja Habermann; Mathias J Gerl; Hans-Georg Kräusslich; Britta Brügger
Journal:  Cell Microbiol       Date:  2013-01-10       Impact factor: 3.715

8.  HIV-1 Gag protein can sense the cholesterol and acyl chain environment in model membranes.

Authors:  Robert A Dick; Shih Lin Goh; Gerald W Feigenson; Volker M Vogt
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-24       Impact factor: 11.205

9.  Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles.

Authors:  Robert B Best; Xiao Zhu; Jihyun Shim; Pedro E M Lopes; Jeetain Mittal; Michael Feig; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2012-07-18       Impact factor: 6.006

Review 10.  Thermodynamics of lipid interactions in complex bilayers.

Authors:  Paulo F F Almeida
Journal:  Biochim Biophys Acta       Date:  2008-08-15
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  15 in total

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Journal:  J Cell Biol       Date:  2022-09-29       Impact factor: 8.077

2.  Molecular Structure of Sphingomyelin in Fluid Phase Bilayers Determined by the Joint Analysis of Small-Angle Neutron and X-ray Scattering Data.

Authors:  Milka Doktorova; Norbert Kučerka; Jacob J Kinnun; Jianjun Pan; Drew Marquardt; Haden L Scott; Richard M Venable; Richard W Pastor; Stephen R Wassall; John Katsaras; Frederick A Heberle
Journal:  J Phys Chem B       Date:  2020-06-16       Impact factor: 2.991

Review 3.  Structural and functional consequences of reversible lipid asymmetry in living membranes.

Authors:  Milka Doktorova; Jessica L Symons; Ilya Levental
Journal:  Nat Chem Biol       Date:  2020-11-16       Impact factor: 15.040

4.  The matrix domain of the Gag protein from avian sarcoma virus contains a PI(4,5)P2-binding site that targets Gag to the cell periphery.

Authors:  Susan M Watanabe; Gisselle N Medina; Gunnar N Eastep; Ruba H Ghanam; Jiri Vlach; Jamil S Saad; Carol A Carter
Journal:  J Biol Chem       Date:  2018-10-11       Impact factor: 5.157

5.  Structural basis for targeting avian sarcoma virus Gag polyprotein to the plasma membrane for virus assembly.

Authors:  Jiri Vlach; Gunnar N Eastep; Ruba H Ghanam; Susan M Watanabe; Carol A Carter; Jamil S Saad
Journal:  J Biol Chem       Date:  2018-10-11       Impact factor: 5.157

6.  Interaction of the β amyloid - Aβ(25-35) - peptide with zwitterionic and negatively charged vesicles with and without cholesterol.

Authors:  Jasmeet Singh; Miroslav Peric
Journal:  Chem Phys Lipids       Date:  2018-09-14       Impact factor: 3.329

7.  Preparation of asymmetric phospholipid vesicles for use as cell membrane models.

Authors:  Milka Doktorova; Frederick A Heberle; Barbara Eicher; Robert F Standaert; John Katsaras; Erwin London; Georg Pabst; Drew Marquardt
Journal:  Nat Protoc       Date:  2018-09       Impact factor: 13.491

8.  Unusual mode of dimerization of retinitis pigmentosa-associated F220C rhodopsin.

Authors:  Anoop Narayana Pillai; Joon Lee; Kalpana Pandey; George Khelashvili; Alexander M Payne; Zarek Siegel; Michel A Cuendet; Tylor R Lewis; Vadim Y Arshavsky; Johannes Broichhagen; Joshua Levitz; Anant K Menon
Journal:  Sci Rep       Date:  2021-05-18       Impact factor: 4.996

9.  An Infectious Rous Sarcoma Virus Gag Mutant That Is Defective in Nuclear Cycling.

Authors:  Clifton L Ricaña; Marc C Johnson
Journal:  J Virol       Date:  2021-07-28       Impact factor: 5.103

10.  Structural Insights into the Mechanism of Human T-cell Leukemia Virus Type 1 Gag Targeting to the Plasma Membrane for Assembly.

Authors:  Dominik Herrmann; Lynne W Zhou; Heather M Hanson; Nora A Willkomm; Louis M Mansky; Jamil S Saad
Journal:  J Mol Biol       Date:  2021-07-21       Impact factor: 6.151

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