Literature DB >> 2911463

Different liver nuclear proteins binds to similar DNA sequences in the 5' flanking regions of three hepatic genes.

A Ochoa1, F Brunel, D Mendelzon, G N Cohen, M M Zakin.   

Abstract

The proximal promoter region of the human transferrin gene contains an hepatocyte-specific cis-element (PRI, nucleotides -76 to -51) whose DNA sequence is homologous to a sequence (nucleotides -89 to -68) present in the transcriptionally essential 5' region of the human antithrombin III gene and to another hepatocyte-specific sequence (A domain) of the human alpha 1-antitrypsin gene promoter. The results reported here lead to the conclusion that the liver trans-acting factor Tf-LF1, binding to the transferrin PRI cis-element interacts with the homologous antithrombin III region, but is different from the transcription factor LF-A1 interacting with the A domain of the alpha 1-antitrypsin promoter. The distal region DRI (nucleotides -480 to -454) of the human transferrin gene promoter presents in its core the same 10 nucleotide-long sequence as the PRI cis-element. We have previously shown that the liver protein Tf-LF2, binding to the DRI element is different from the Tf-LF1 trans-acting factor. In this paper we also show that Tf-LF2 is different from the transcription factor LF-A1 interacting with the alpha 1-antitrypsin promoter. The results allow us to conclude that at least three distinct liver nuclear proteins bind to different subsets of 5' DNA regions containing similar sequences. These sequences are present in genes expressed essentially in liver.

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Year:  1989        PMID: 2911463      PMCID: PMC331539          DOI: 10.1093/nar/17.1.119

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  17 in total

1.  DNAse footprinting: a simple method for the detection of protein-DNA binding specificity.

Authors:  D J Galas; A Schmitz
Journal:  Nucleic Acids Res       Date:  1978-09       Impact factor: 16.971

2.  Tissue-specificity of liver gene expression: a common liver-specific promoter element.

Authors:  W Kugler; U Wagner; G U Ryffel
Journal:  Nucleic Acids Res       Date:  1988-04-25       Impact factor: 16.971

3.  Purification and characterization of chicken ovalbumin gene upstream promoter transcription factor from homologous oviduct cells.

Authors:  M K Bagchi; S Y Tsai; M J Tsai; B W O'Malley
Journal:  Mol Cell Biol       Date:  1987-12       Impact factor: 4.272

4.  Interactions of DNA-binding proteins with the 5' region of the human transferrin gene.

Authors:  F Brunel; A Ochoa; E Schaeffer; F Boissier; Y Guillou; S Cereghini; G N Cohen; M M Zakin
Journal:  J Biol Chem       Date:  1988-07-25       Impact factor: 5.157

5.  Human CCAAT-binding proteins have heterologous subunits.

Authors:  L A Chodosh; A S Baldwin; R W Carthew; P A Sharp
Journal:  Cell       Date:  1988-04-08       Impact factor: 41.582

6.  Sequencing end-labeled DNA with base-specific chemical cleavages.

Authors:  A M Maxam; W Gilbert
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

7.  A multiplicity of CCAAT box-binding proteins.

Authors:  A Dorn; J Bollekens; A Staub; C Benoist; D Mathis
Journal:  Cell       Date:  1987-09-11       Impact factor: 41.582

8.  Interaction of a liver-specific nuclear factor with the fibrinogen and alpha 1-antitrypsin promoters.

Authors:  G Courtois; J G Morgan; L A Campbell; G Fourel; G R Crabtree
Journal:  Science       Date:  1987-10-30       Impact factor: 47.728

9.  A liver-specific DNA-binding protein recognizes multiple nucleotide sites in regulatory regions of transthyretin, alpha 1-antitrypsin, albumin, and simian virus 40 genes.

Authors:  R H Costa; D R Grayson; K G Xanthopoulos; J E Darnell
Journal:  Proc Natl Acad Sci U S A       Date:  1988-06       Impact factor: 11.205

10.  Two distinct factors interact with the promoter regions of several liver-specific genes.

Authors:  E M Hardon; M Frain; G Paonessa; R Cortese
Journal:  EMBO J       Date:  1988-06       Impact factor: 11.598

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  13 in total

1.  The binding site for the liver-specific transcription factor Tf-LF1 and the TATA box of the human transferrin gene promoter are the only elements necessary to direct liver-specific transcription in vitro.

Authors:  D Mendelzon; F Boissier; M M Zakin
Journal:  Nucleic Acids Res       Date:  1990-10-11       Impact factor: 16.971

2.  The transcription factor LF-A1 interacts with a bipartite recognition sequence in the promoter regions of several liver-specific genes.

Authors:  D P Ramji; M H Tadros; E M Hardon; R Cortese
Journal:  Nucleic Acids Res       Date:  1991-03-11       Impact factor: 16.971

3.  Liver-enriched transcription factors uncoupled from expression of hepatic functions in hepatoma cell lines.

Authors:  D Chaya; C Fougère-Deschatrette; M C Weiss
Journal:  Mol Cell Biol       Date:  1997-11       Impact factor: 4.272

4.  Cloning and sequencing of PYBP, a pyrimidine-rich specific single strand DNA-binding protein.

Authors:  F Brunel; P M Alzari; P Ferrara; M M Zakin
Journal:  Nucleic Acids Res       Date:  1991-10-11       Impact factor: 16.971

5.  Identification of regulatory sequences and protein-binding sites in the liver-type promoter of a gene encoding 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase.

Authors:  F P Lemaigre; S M Durviaux; G G Rousseau
Journal:  Mol Cell Biol       Date:  1991-02       Impact factor: 4.272

6.  Ligand-dependent enhancement of human antithrombin gene expression by retinoid X receptor alpha and thyroid hormone receptor beta.

Authors:  R W Niessen; F Rezaee; P H Reitsma; M Peters; J J de Vijlder; A Sturk
Journal:  Biochem J       Date:  1996-08-15       Impact factor: 3.857

7.  Hypoxia-inducible nuclear factors bind to an enhancer element located 3' to the human erythropoietin gene.

Authors:  G L Semenza; M K Nejfelt; S M Chi; S E Antonarakis
Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-01       Impact factor: 11.205

8.  Identification of an enhancer involved in the melanoma-specific expression of the tumor antigen melanotransferrin gene.

Authors:  N Duchange; A Ochoa; G D Plowman; A Rozé; M Amdjadi; M M Zakin
Journal:  Nucleic Acids Res       Date:  1992-06-11       Impact factor: 16.971

9.  Analysis of the promoter of the cytochrome P-450 2B2 gene in the rat.

Authors:  M Hoffmann; W H Mager; B J Scholte; A Civil; R J Planta
Journal:  Gene Expr       Date:  1992

10.  Interaction of DNA-binding proteins with the tissue-specific human apolipoprotein-AII enhancer.

Authors:  M A Lucero; D Sanchez; A R Ochoa; F Brunel; G N Cohen; F E Baralle; M M Zakin
Journal:  Nucleic Acids Res       Date:  1989-03-25       Impact factor: 16.971

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