Literature DB >> 29111979

Machine learning and data science in soft materials engineering.

Andrew L Ferguson1.   

Abstract

In many branches of materials science it is now routine to generate data sets of such large size and dimensionality that conventional methods of analysis fail. Paradigms and tools from data science and machine learning can provide scalable approaches to identify and extract trends and patterns within voluminous data sets, perform guided traversals of high-dimensional phase spaces, and furnish data-driven strategies for inverse materials design. This topical review provides an accessible introduction to machine learning tools in the context of soft and biological materials by 'de-jargonizing' data science terminology, presenting a taxonomy of machine learning techniques, and surveying the mathematical underpinnings and software implementations of popular tools, including principal component analysis, independent component analysis, diffusion maps, support vector machines, and relative entropy. We present illustrative examples of machine learning applications in soft matter, including inverse design of self-assembling materials, nonlinear learning of protein folding landscapes, high-throughput antimicrobial peptide design, and data-driven materials design engines. We close with an outlook on the challenges and opportunities for the field.

Mesh:

Year:  2018        PMID: 29111979     DOI: 10.1088/1361-648X/aa98bd

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  10 in total

Review 1.  Machine Learning Force Fields and Coarse-Grained Variables in Molecular Dynamics: Application to Materials and Biological Systems.

Authors:  Paraskevi Gkeka; Gabriel Stoltz; Amir Barati Farimani; Zineb Belkacemi; Michele Ceriotti; John D Chodera; Aaron R Dinner; Andrew L Ferguson; Jean-Bernard Maillet; Hervé Minoux; Christine Peter; Fabio Pietrucci; Ana Silveira; Alexandre Tkatchenko; Zofia Trstanova; Rafal Wiewiora; Tony Lelièvre
Journal:  J Chem Theory Comput       Date:  2020-07-16       Impact factor: 6.006

2.  Reverse-engineering method for XPCS studies of non-equilibrium dynamics.

Authors:  Anastasia Ragulskaya; Vladimir Starostin; Nafisa Begam; Anita Girelli; Hendrik Rahmann; Mario Reiser; Fabian Westermeier; Michael Sprung; Fajun Zhang; Christian Gutt; Frank Schreiber
Journal:  IUCrJ       Date:  2022-05-28       Impact factor: 5.588

3.  Targeted sequence design within the coarse-grained polymer genome.

Authors:  Michael A Webb; Nicholas E Jackson; Phwey S Gil; Juan J de Pablo
Journal:  Sci Adv       Date:  2020-10-21       Impact factor: 14.136

4.  Unsupervised Learning Methods for Molecular Simulation Data.

Authors:  Aldo Glielmo; Brooke E Husic; Alex Rodriguez; Cecilia Clementi; Frank Noé; Alessandro Laio
Journal:  Chem Rev       Date:  2021-05-04       Impact factor: 60.622

5.  Integration of Machine Learning and Coarse-Grained Molecular Simulations for Polymer Materials: Physical Understandings and Molecular Design.

Authors:  Danh Nguyen; Lei Tao; Ying Li
Journal:  Front Chem       Date:  2022-01-24       Impact factor: 5.221

Review 6.  Artificial Intelligence-Empowered 3D and 4D Printing Technologies toward Smarter Biomedical Materials and Approaches.

Authors:  Raffaele Pugliese; Stefano Regondi
Journal:  Polymers (Basel)       Date:  2022-07-08       Impact factor: 4.967

Review 7.  Structure and luminescence of DNA-templated silver clusters.

Authors:  Anna Gonzàlez-Rosell; Cecilia Cerretani; Peter Mastracco; Tom Vosch; Stacy M Copp
Journal:  Nanoscale Adv       Date:  2021-01-21

8.  A Deep Learning Framework Discovers Compositional Order and Self-Assembly Pathways in Binary Colloidal Mixtures.

Authors:  Runfang Mao; Jared O'Leary; Ali Mesbah; Jeetain Mittal
Journal:  JACS Au       Date:  2022-07-19

Review 9.  Automation and data-driven design of polymer therapeutics.

Authors:  Rahul Upadhya; Shashank Kosuri; Matthew Tamasi; Travis A Meyer; Supriya Atta; Michael A Webb; Adam J Gormley
Journal:  Adv Drug Deliv Rev       Date:  2020-11-24       Impact factor: 15.470

10.  Adaptive Recombinant Nanoworms from Genetically Encodable Star Amphiphiles.

Authors:  Md Shahadat Hossain; Jingjing Ji; Christopher J Lynch; Miguel Guzman; Shikha Nangia; Davoud Mozhdehi
Journal:  Biomacromolecules       Date:  2021-12-23       Impact factor: 6.988

  10 in total

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