Literature DB >> 29108429

Sources of spontaneous mutagenesis in bacteria.

Jeremy W Schroeder1, Ponlkrit Yeesin1, Lyle A Simmons2, Jue D Wang1.   

Abstract

Mutations in an organism's genome can arise spontaneously, that is, in the absence of exogenous stress and prior to selection. Mutations are often neutral or deleterious to individual fitness but can also provide genetic diversity driving evolution. Mutagenesis in bacteria contributes to the already serious and growing problem of antibiotic resistance. However, the negative impacts of spontaneous mutagenesis on human health are not limited to bacterial antibiotic resistance. Spontaneous mutations also underlie tumorigenesis and evolution of drug resistance. To better understand the causes of genetic change and how they may be manipulated in order to curb antibiotic resistance or the development of cancer, we must acquire a mechanistic understanding of the major sources of mutagenesis. Bacterial systems are particularly well-suited to studying mutagenesis because of their fast growth rate and the panoply of available experimental tools, but efforts to understand mutagenic mechanisms can be complicated by the experimental system employed. Here, we review our current understanding of mutagenic mechanisms in bacteria and describe the methods used to study mutagenesis in bacterial systems.

Entities:  

Keywords:  Spontaneous mutagenesis; evolution; fluctuation test; mutation accumulation; mutation reporter; selection

Mesh:

Year:  2017        PMID: 29108429      PMCID: PMC5975382          DOI: 10.1080/10409238.2017.1394262

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  164 in total

Review 1.  The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine).

Authors:  M L Michaels; J H Miller
Journal:  J Bacteriol       Date:  1992-10       Impact factor: 3.490

2.  Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations in Escherichia coli.

Authors:  Ashok S Bhagwat; Weilong Hao; Jesse P Townes; Heewook Lee; Haixu Tang; Patricia L Foster
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-02       Impact factor: 11.205

Review 3.  Y-family DNA polymerases in Escherichia coli.

Authors:  Daniel F Jarosz; Penny J Beuning; Susan E Cohen; Graham C Walker
Journal:  Trends Microbiol       Date:  2007-01-04       Impact factor: 17.079

4.  Frequent Interchromosomal Template Switches during Gene Conversion in S. cerevisiae.

Authors:  Olga Tsaponina; James E Haber
Journal:  Mol Cell       Date:  2014-07-24       Impact factor: 17.970

5.  Evolution of the mutation rate.

Authors:  Michael Lynch
Journal:  Trends Genet       Date:  2010-06-30       Impact factor: 11.639

Review 6.  Biochemical basis of DNA replication fidelity.

Authors:  M F Goodman; S Creighton; L B Bloom; J Petruska
Journal:  Crit Rev Biochem Mol Biol       Date:  1993       Impact factor: 8.250

7.  Replication slippage of different DNA polymerases is inversely related to their strand displacement efficiency.

Authors:  D Canceill; E Viguera; S D Ehrlich
Journal:  J Biol Chem       Date:  1999-09-24       Impact factor: 5.157

8.  Sequence-dependent DNA structure. The role of base stacking interactions.

Authors:  C A Hunter
Journal:  J Mol Biol       Date:  1993-04-05       Impact factor: 5.469

9.  DNA transcription and repressor binding affect deletion formation in Escherichia coli plasmids.

Authors:  D Vilette; M Uzest; S D Ehrlich; B Michel
Journal:  EMBO J       Date:  1992-10       Impact factor: 11.598

10.  Chromosome rearrangements via template switching between diverged repeated sequences.

Authors:  Ranjith P Anand; Olga Tsaponina; Patricia W Greenwell; Cheng-Sheng Lee; Wei Du; Thomas D Petes; James E Haber
Journal:  Genes Dev       Date:  2014-11-01       Impact factor: 11.361

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  23 in total

1.  Real-time dynamics of mutagenesis reveal the chronology of DNA repair and damage tolerance responses in single cells.

Authors:  Stephan Uphoff
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-25       Impact factor: 11.205

Review 2.  Using membrane perturbing small molecules to target chronic persistent infections.

Authors:  Cassandra L Schrank; Ingrid K Wilt; Carlos Monteagudo Ortiz; Brittney A Haney; William M Wuest
Journal:  RSC Med Chem       Date:  2021-06-11

3.  Can Bacteriophages Replace Antibiotics?

Authors:  Mikael Skurnik
Journal:  Antibiotics (Basel)       Date:  2022-04-26

4.  Adaptation to DNA Damage, an Asymptotic Approach for a Cooperative Non-local System.

Authors:  Alexis Léculier; Pierre Roux
Journal:  Acta Appl Math       Date:  2022-06-21       Impact factor: 1.563

Review 5.  Biofilm antimicrobial susceptibility through an experimental evolutionary lens.

Authors:  Tom Coenye; Mona Bové; Thomas Bjarnsholt
Journal:  NPJ Biofilms Microbiomes       Date:  2022-10-18       Impact factor: 8.462

Review 6.  Half-Intercalation Stabilizes Slipped Mispairing and Explains Genome Vulnerability to Frameshift Mutagenesis by Endogenous "Molecular Bookmarks".

Authors:  Andrei Kuzminov
Journal:  Bioessays       Date:  2019-08-05       Impact factor: 4.345

7.  Molecular insights into the genome dynamics and interactions between core and acquired genomes of Vibrio cholerae.

Authors:  Archana Pant; Satyabrata Bag; Bipasa Saha; Jyoti Verma; Pawan Kumar; Sayantan Banerjee; Bhoj Kumar; Yashwant Kumar; Anbumani Desigamani; Suhrid Maiti; Tushar K Maiti; Sanjay K Banerjee; Rupak K Bhadra; Hemanta Koley; Shanta Dutta; G Balakrish Nair; Thandavarayan Ramamurthy; Bhabatosh Das
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-01       Impact factor: 11.205

8.  Genotoxic Agents Produce Stressor-Specific Spectra of Spectinomycin Resistance Mutations Based on Mechanism of Action and Selection in Bacillus subtilis.

Authors:  Benjamin J Korry; Stella Ye Eun Lee; Amit K Chakrabarti; Ashley H Choi; Collin Ganser; Jason T Machan; Peter Belenky
Journal:  Antimicrob Agents Chemother       Date:  2021-08-02       Impact factor: 5.191

Review 9.  Formation and repair of unavoidable, endogenous interstrand cross-links in cellular DNA.

Authors:  Kurt Housh; Jay S Jha; Tuhin Haldar; Saosan Binth Md Amin; Tanhaul Islam; Amanda Wallace; Anuoluwapo Gomina; Xu Guo; Christopher Nel; Jesse W Wyatt; Kent S Gates
Journal:  DNA Repair (Amst)       Date:  2020-12-24

10.  Influence of Electron-Holes on DNA Sequence-Specific Mutation Rates.

Authors:  Martha Y Suárez-Villagrán; Ricardo B R Azevedo; John H Miller
Journal:  Genome Biol Evol       Date:  2018-04-01       Impact factor: 3.416

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