Literature DB >> 29108424

Correct microarray analysis approaches in 'Hsa-circRNA11783-2 in peripheral blood is correlated with coronary artery disease and type 2 diabetes mellitus'.

Chenyu Li1, Long Zhao1, Wei Jiang1, Lin Che1, Yan Xu1.   

Abstract

We read with great interest the article by Li et al. The results are illuminating for understanding the relationship among Hsa-circRNA11783-2, coronary artery disease (CAD) and type 2 diabetes mellitus (T2DM). However, from our perspective, the bioinformatics analyses need further context as the statistics for differential fold changes in expression data are not explained fully. The authors seem to use unadjusted p values for detecting differentially expressed circular RNA (differentially expressed genes (DEGs)) between the control, CAD and T2DM group. Due to the high false positives caused by a large number of probes and multiple comparisons, it seems essential to analyse microarray data properly to reach a reliable result by a statistical method. Only selecting circular RNA with greater than two fold change with unadjusted p values < 0.05 in expression is not reliable and suitable for high-level microarray analysis.

Entities:  

Keywords:  Bioinformatics; circular RNA; microarray analysis; statistics

Mesh:

Year:  2017        PMID: 29108424     DOI: 10.1177/1479164117739435

Source DB:  PubMed          Journal:  Diab Vasc Dis Res        ISSN: 1479-1641            Impact factor:   3.291


  3 in total

1.  Circular RNAs Hsa_circ_0002715 and Hsa_circ_0035197 in Peripheral Blood Are Novel Potential Biomarkers for New-Onset Rheumatoid Arthritis.

Authors:  Qing Luo; Jun Liu; Biqi Fu; Lu Zhang; Yang Guo; Zikun Huang; Junming Li
Journal:  Dis Markers       Date:  2019-10-29       Impact factor: 3.434

2.  Circ_0091579 enhances the malignancy of hepatocellular carcinoma via miR-1287/PDK2 axis.

Authors:  Junwei Shu; Jiayuan Du; Futao Wang; Yong Cheng; Gangxin Chen; Bing Xu; Dianpeng Zhang; Shuangjiang Chen
Journal:  Open Life Sci       Date:  2021-01-25       Impact factor: 0.938

3.  circEPS15 Overexpression in Hepatocellular Carcinoma Modulates Tumor Invasion and Migration.

Authors:  Bin Jiang; Maolin Tian; Gang Li; Abuduhaibaier Sadula; Dianrong Xiu; Chunhui Yuan; Yuntao Bing
Journal:  Front Genet       Date:  2022-02-08       Impact factor: 4.599

  3 in total

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