Literature DB >> 29106068

Global Proteome Analysis Links Lysine Acetylation to Diverse Functions in Oryza Sativa.

Chao Xue1, Shuai Liu1, Chen Chen1, Jun Zhu2, Xibin Yang2, Yong Zhou1, Rui Guo1, Xiaoyu Liu1, Zhiyun Gong1.   

Abstract

Lysine acetylation (Kac) is an important protein post-translational modification in both eukaryotes and prokaryotes. Herein, we report the results of a global proteome analysis of Kac and its diverse functions in rice (Oryza sativa). We identified 1353 Kac sites in 866 proteins in rice seedlings. A total of 11 Kac motifs are conserved, and 45% of the identified proteins are localized to the chloroplast. Among all acetylated proteins, 38 Kac sites are combined in core histones. Bioinformatics analysis revealed that Kac occurs on a diverse range of proteins involved in a wide variety of biological processes, especially photosynthesis. Protein-protein interaction networks of the identified proteins provided further evidence that Kac contributes to a wide range of regulatory functions. Furthermore, we demonstrated that the acetylation level of histone H3 (lysine 27 and 36) is increased in response to cold stress. In summary, our approach comprehensively profiles the regulatory roles of Kac in the growth and development of rice.
© 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Oryza sativa; acetylome; cold stress; lysine acetylation; photosynthesis

Mesh:

Substances:

Year:  2018        PMID: 29106068     DOI: 10.1002/pmic.201700036

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  10 in total

1.  Global Involvement of Lysine Crotonylation in Protein Modification and Transcription Regulation in Rice.

Authors:  Shuai Liu; Chao Xue; Yuan Fang; Gang Chen; Xiaojun Peng; Yong Zhou; Chen Chen; Guanqing Liu; Minghong Gu; Kai Wang; Wenli Zhang; Yufeng Wu; Zhiyun Gong
Journal:  Mol Cell Proteomics       Date:  2018-07-18       Impact factor: 5.911

2.  Comprehensive Proteomic Analysis of Lysine Acetylation in Nicotiana benthamiana After Sensing CWMV Infection.

Authors:  Bowen Yuan; Tingting Liu; Ye Cheng; Shiqi Gao; Linzhi Li; Linna Cai; Jian Yang; Jianping Chen; Kaili Zhong
Journal:  Front Microbiol       Date:  2021-05-17       Impact factor: 5.640

3.  Proteome-Wide Analyses Reveal the Diverse Functions of Lysine 2-Hydroxyisobutyrylation in Oryza sativa.

Authors:  Chao Xue; Zhongying Qiao; Xu Chen; Penghui Cao; Kai Liu; Shuai Liu; Lu Ye; Zhiyun Gong
Journal:  Rice (N Y)       Date:  2020-06-05       Impact factor: 4.783

4.  Genome-wide Profiling of Histone Lysine Butyrylation Reveals its Role in the Positive Regulation of Gene Transcription in Rice.

Authors:  Shuai Liu; Guanqing Liu; Peifeng Cheng; Chao Xue; Yong Zhou; Xu Chen; Lu Ye; Zhongying Qiao; Tao Zhang; Zhiyun Gong
Journal:  Rice (N Y)       Date:  2019-11-27       Impact factor: 4.783

5.  Histone deacetylases control lysine acetylation of ribosomal proteins in rice.

Authors:  Qiutao Xu; Qian Liu; Zhengting Chen; Yaping Yue; Yuan Liu; Yu Zhao; Dao-Xiu Zhou
Journal:  Nucleic Acids Res       Date:  2021-05-07       Impact factor: 16.971

6.  Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in the Phytopathogenic Fungus Botrytis cinerea.

Authors:  Yang Xu; Xiaoxia Li; Wenxing Liang; Mengjie Liu
Journal:  Front Microbiol       Date:  2020-11-27       Impact factor: 5.640

7.  Qualitative Proteome-Wide Analysis Reveals the Diverse Functions of Lysine Crotonylation in Dendrobium huoshanense.

Authors:  Jing Wu; Xiaoxi Meng; Weimin Jiang; Zhaojian Wang; Jing Zhang; Fei Meng; Xiaoyan Yao; Mengjuan Ye; Liang Yao; Longhai Wang; Nianjun Yu; Daiyin Peng; Shihai Xing
Journal:  Front Plant Sci       Date:  2022-02-16       Impact factor: 5.753

8.  Cross-Talk of Protein Expression and Lysine Acetylation in Response to TMV Infection in Nicotiana benthamiana.

Authors:  Liyun Song; Huaixu Zhan; Yujie Wang; Zhonglong Lin; Bin Li; Lili Shen; Yubing Jiao; Ying Li; Fenglong Wang; Jinguang Yang
Journal:  ACS Omega       Date:  2022-09-01

9.  Construction of a Quantitative Acetylomic Tissue Atlas in Rice (Oryza sativa L.).

Authors:  Zhiyong Li; Yifeng Wang; Babatunde Kazeem Bello; Abolore Adijat Ajadi; Xiaohong Tong; Yuxiao Chang; Jian Zhang
Journal:  Molecules       Date:  2018-11-01       Impact factor: 4.411

Review 10.  Advances in proteome-wide analysis of plant lysine acetylation.

Authors:  Linchao Xia; Xiangge Kong; Haifeng Song; Qingquan Han; Sheng Zhang
Journal:  Plant Commun       Date:  2021-11-24
  10 in total

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