Literature DB >> 29105032

Bonding, structural and thermodynamic analysis of dissociative adsorption of H3O+ ion onto calcite (101⁻4) surface: CPMD and DFT calculations.

Mohammad Hadi Ghatee1,2,3, Mohammad Mehdi Koleini4.   

Abstract

We used density functional theory (DFT) and Car-Parrinello molecular dynamics (CPMD) simulation to investigate the adsorption and bond formation of hydronium ion (H3O+) onto a [Formula: see text] calcite surface. For surface coverage of 25% to 100%, the nature of H3O+ interaction was explored through electron density and energetics in the context of bond critical points. The adsorbate-adsorbent structure was studied by simulation of pair correlation function. The results revealed that dissociation into water molecule(s) and proton(s) complements H3O+ ion(s) adsorbtion. The H2O molecule adsorbs onto the surface via its O atom, and interacts with surface calcium in a closed-shell mode; the H+ ion makes a covalent bond to the surface oxygen while maintaining H-bonding with water. Adsorption energies were diminished by 70-90 kJ mol-1 when Obridge-bonded H+ ions transferred to the Oterminal manually. While dissociative adsorption of H3O+ ions is spontaneous at all surface coverages tested, the free energy was lowest at 75% coverage. Also, protonation of a completely pre-hydrated calcite surface leads to stronger interaction of water molecules with the surface. This unique outlook on hydrating calcite provides specific insights into biomineralization of this mineral, and helps depict further pH consequences in the field of biomaterial adsorption. Graphical abstract Dissociative adsorption of hydronium ion onto the surface of calcite.

Entities:  

Keywords:  CPMD simulation; DFT calculation; Dissociative adsorption; NBO and bond critical point; Thermodynamic analysis; Water and hydronium ion; calcite surface

Year:  2017        PMID: 29105032     DOI: 10.1007/s00894-017-3499-1

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  23 in total

1.  Free energy of adsorption of water and metal ions on the [1014] calcite surface.

Authors:  Sebastien Kerisit; Stephen C Parker
Journal:  J Am Chem Soc       Date:  2004-08-18       Impact factor: 15.419

2.  Effect of strontium contaminants upon the size and solubility of calcite crystals precipitated by the bacterial hydrolysis of urea.

Authors:  Andrew C Mitchell; F Grant Ferris
Journal:  Environ Sci Technol       Date:  2006-02-01       Impact factor: 9.028

3.  Water is the key to nonclassical nucleation of amorphous calcium carbonate.

Authors:  Paolo Raiteri; Julian D Gale
Journal:  J Am Chem Soc       Date:  2010-11-19       Impact factor: 15.419

4.  Crystalline order of a water/glycine film coadsorbed on the (104) calcite surface.

Authors:  Uta Magdans; Xavier Torrelles; Klaus Angermund; Hermann Gies; Jordi Rius
Journal:  Langmuir       Date:  2007-03-30       Impact factor: 3.882

Review 5.  Computational techniques at the organic-inorganic interface in biomineralization.

Authors:  John H Harding; Dorothy M Duffy; Maria L Sushko; P Mark Rodger; David Quigley; James A Elliott
Journal:  Chem Rev       Date:  2008-10-22       Impact factor: 60.622

6.  Efficient pseudopotentials for plane-wave calculations.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1991-01-15

7.  Atoms-in-molecules analysis of extended hypervalent five-center, six-electron (5c-6e) C(2)Z(2)O interactions at the 1,8,9-positions of anthraquinone and 9-methoxyanthracene systems.

Authors:  Waro Nakanishi; Takashi Nakamoto; Satoko Hayashi; Takahiro Sasamori; Norihiro Tokitoh
Journal:  Chemistry       Date:  2007       Impact factor: 5.236

8.  A reactive force field for aqueous-calcium carbonate systems.

Authors:  Julian D Gale; Paolo Raiteri; Adri C T van Duin
Journal:  Phys Chem Chem Phys       Date:  2011-08-18       Impact factor: 3.676

9.  Spatially resolved product formation in the reaction of formic acid with calcium carbonate (1014): the role of step density and adsorbed water-assisted ion mobility.

Authors:  Courtney R Usher; Jonas Baltrusaitis; Vicki H Grassian
Journal:  Langmuir       Date:  2007-05-15       Impact factor: 3.882

10.  Detection and evaluation of hydrogen bond strength in nucleic acid base pairs.

Authors:  Afshan Mohajeri; Fatemeh Fadaei Nobandegani
Journal:  J Phys Chem A       Date:  2007-12-18       Impact factor: 2.781

View more
  1 in total

1.  Atomistic insight into salinity dependent preferential binding of polar aromatics to calcite/brine interface: implications to low salinity waterflooding.

Authors:  Mohammad Mehdi Koleini; Mohammad Hasan Badizad; Hassan Mahani; Ali Mirzaalian Dastjerdi; Shahab Ayatollahi; Mohammad Hossein Ghazanfari
Journal:  Sci Rep       Date:  2021-06-07       Impact factor: 4.379

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.