| Literature DB >> 29100529 |
Joanne Hassan1,2, Laura Wangai3, Peter Borus4, Christopher Khayeka-Wandabwa5,6, Lucy Wanja Karani7, Mercy Kithinji8, Michael Kiptoo7,9.
Abstract
BACKGROUND: Poliomyelitis is an acute viral infection caused by poliovirus and transmitted via the fecal-oral route. The causative agent is one of the three serotypes of poliovirus (serotypes 1, 2, 3) that differ slightly in capsid protein. Prolonged vaccine-related poliovirus shedding in human immunodeficiency virus (HIV) positive individuals has been linked to possible reservoir for reintroduction of polioviruses after eradication. The study therefore aimed at estimating the duration for vaccine-related poliovirus shedding among potentially and HIV-infected persons.Entities:
Keywords: HIV; Immunization; Poliomyelitis; Poliovirus; Poliovirus shedding; Real time polymerase chain reaction; Vaccination
Mesh:
Substances:
Year: 2017 PMID: 29100529 PMCID: PMC5670520 DOI: 10.1186/s13104-017-2843-y
Source DB: PubMed Journal: BMC Res Notes ISSN: 1756-0500
Primer or probe sequence for intratypic differentiation (ITD)
| Specificity | Primer or probe (polarity) | Primer or probe sequence (5′ → 3′) |
|---|---|---|
| Pan-enterovirus | PCR-1(A) | GCGATTGTCACCATWAGCAGYCA |
| Pan-poliovirusa | panPV/PCR-1(A) | AYRTACATIATYTGRTAIAC |
| Serotype 1a | seroPV1A(A) | ATCATIYTPTCIARPATYTG |
| Serotype 2 | seroPV2A (A) | AYICCYTCIACIRCICCYTC |
| Serotype 3a | seroPV3A (A) | CCCIAIPTGRTCRTTIKPRTC |
| Sabin 1 | Sab1/PCR-1(A) | CCACTGGCTTCAGTGTTT |
| Sabin 2 | Sab2/PCR-1(A) | CGGCTTTGTGTCAGGCA |
| Sabin 3 | Sab3/PCR-1(A) | TTAGTATCAGGTAAGCTATC |
Degenerate primers: K=G and T; M=A and C; R=A and G; Y=C and T; I = degenerate base analog, Inosine; P = degenerate base for (TC)
aWe used degenerate PCR conditions with these primer sets
Primer or probe sequence for Sabin vaccine derived poliovirus (VDPV)
| Primer specificity | Primer and probe sequences 5′ → 3′ |
|---|---|
| S1 VDPV VP1 (Target aa# 99) | Sense CATGCGTGGCCATTATA |
| S2 VDPV VP1 (Target aa# 143) | Sense GACATGGAGTTCACTTTTG |
| S3 VDPV VP1 (Target aa# 285–290) | Sense CATTTACATGAAACCCAAAC |
The demographic characteristics of the study subjects
| Characteristics of the HIV positive and negative (control) study subjects (N = 26) | ||
|---|---|---|
| Frequency of N | Percentage (%) | |
| Age (months) | ||
| < 12 | 4 | 15.4 |
| 13–24 | 8 | 30.8 |
| 25–48 | 12 | 46.2 |
| 49–60 | 2 | 7.7 |
| Sex | ||
| Female | 14 | 53.8 |
| Male | 12 | 46.2 |
| HIV status | ||
| Positive | 10 | 38.5 |
| Negative | 16 | 61.5 |
Virus isolation verses HIV status of study subjects
| Sample size | Total, n | HIV(+), n | HIV(−), n |
|---|---|---|---|
| Children in the study | 26 | 10 | 16 |
| Isolation rate for suspected polioviruses and NPEV | |||
| Specimens with suspected polioviruses or NPEV isolated in week 2 | 26 | 10 | 16 |
| Specimens with suspected polioviruses or NPEV isolated in week 4 | 26 | 10 | 16 |
| Specimens with suspected polioviruses or NPEV isolated in week 6 | 1 | 1 | 0 |
| Specimens with suspected polioviruses or NPEV isolated in week 8a | 1 | 0 | 1 |
aOne study subject who was HIV-uninfected shed NPEV up to week 8 of sample analysis
Duration of shedding vaccine after immunization verses the proportional study subjects at the time points and HIV status
| Parameters (time and poliovirus) | Total, N = 26, (%) | HIV(+), n = 10, (%) | HIV(−), n = 16, (%) |
|---|---|---|---|
| 2 weeks | |||
| PV 1 | 9 (34.6) | 3 (30) | 6 (37.5) |
| PV 2 | 1 (3.8) | 1 (10) | 0 (0) |
| PV 3 | 10 (38.5) | 4 (40) | 6 (37.5) |
| PV 1 + 2 | 1 (3.8) | 1 (10) | 0 (0) |
| PV 1 + 3 | 3 (11.5) | 1 (10) | 2 (12.5) |
| PV 1 + 2 + 3 | 1 (3.8) | 0 (0) | 1 (6.3) |
| PV 1 + 2 + 3 + NPEV | 1 (3.8) | 0 (0) | 1 (6.3) |
| 4 weeks | |||
| PV 1 | 7 (26.9) | 2 (20) | 5 (31.3) |
| PV 2 | 1 (3.8) | 1 (10) | 0 (0) |
| PV 3 | 10 (38.5) | 3 (30) | 7 (43.8) |
| PV 1 + 2 | 1 (3.8) | 1 (10) | 0 (0) |
| PV 1 + 3 | 5 (19.2) | 3 (30) | 2 (12.5) |
| PV 2 + 3 | 1 (3.8) | 0 (0) | 1 (6.3) |
| PV 1 + 2 + 3 | 1 (3.8) | 0 (0) | 1 (6.3) |
| PV 1 + 3 + NPEV | 1 (3.8) | 0 (0) | 1 (6.3) |
| 6 weeks | |||
| Negative | 24 (92.3) | 9 (90) | 15 (93.8) |
| PV 1 | 0 (0) | 0 (0) | 0 (0) |
| PV 2 | 1 (3.8) | 1 (10) | 0 (0) |
| NPEV | 1 (3.8) | 0 (0) | 1 (6.3) |
| 8 weeks | |||
| Negative | 25 (96.2) | 10 (100) | 15 (93.8) |
| NPEV | 1 (3.8) | 0 (0) | 1 (6.3) |
Duration and proportions of participants shedding vaccine after immunization verses the age of the study subjects
| Parameters | Total, n = 26 (%) | < 12 months | 13–24 months | 25–48 months | 49–60 months |
|---|---|---|---|---|---|
| 2 weeks | |||||
| PV 1 | 9 (34.6) | 1 (3.8) | 2 (7.7) | 4 (15.4) | 2 (7.7) |
| PV 2 | 1 (3.8) | 0 (0) | 0 (0) | 1 (3.8) | 0 (0) |
| PV 3 | 10 (38.5) | 3 (11.5) | 4 (15.4) | 3 (11.5) | 0 (0) |
| PV 1 + 2 | 1 (3.8) | 0 (0) | 0 (0) | 1 (3.8) | 0 (0) |
| PV 1 + 3 | 3 (11.5) | 0 (0) | 2 (7.7) | 1 (3.8) | 0 (0) |
| PV 1 + 2+3 | 1 (3.8) | 0 (0) | 0 (0) | 1 (3.8) | 0 (0) |
| PV 1 + 2 + 3 + NPEV | 1 (3.8) | 0 (0) | 0 (0) | 1 (3.8) | 0 (0) |
| 4 weeks | |||||
| PV 1 | 7 (26.9) | 2 (7.7) | 1 (3.8) | 3 (11.5) | 1 (3.8) |
| PV 2 | 1 (3.8) | 0 (0) | 0 (0) | 1 (3.8) | 0 (0) |
| PV 3 | 10 (38.5) | 2 (7.7) | 5 (19.2) | 3 (11.5) | 0 (0) |
| PV 1 + 2 | 1 (3.8) | 0 (0) | 0 (0) | 0 (0) | 1 (3.8) |
| PV 1 + 3 | 5 (19.2) | 0 (0) | 2 (7.7) | 3 (11.5) | 0 (0) |
| PV 2 + 3 | 1 (3.8) | 0 (0) | 0 (0) | 1 (3.8) | 0 (0) |
| PV 1 + 2 + 3 | 1 (3.8) | 0 (0) | 0 (0) | 1 (3.8) | 0 (0) |
| PV 1 + 3 + NPEV | 1 (3.8) | 0 (0) | 0 (0) | 1 (3.8) | 0 (0) |
| 6 weeks | |||||
| Negative | 24 (92.3) | 4 (15.4) | 8 (30.8) | 10 (38.5) | 2 (7.7) |
| PV 2 | 1 (3.8) | 0 (0) | 0 (0) | 1 (3.8) | 0 (0) |
| NPEV | 1 (3.8) | 0 (0) | 0 (0) | 1 (3.8) | 0 (0) |
| 8 weeks | |||||
| Negative | 25 (96.2) | 4 (15.4) | 8 (30.8) | 11 (42.3) | 2 (7.7) |
| NPEV | 1 (3.8) | 0 (0) | 0 (0) | 1 (3.8) | 0 (0) |