| Literature DB >> 29100364 |
Li Zhu1, Zhiqiang Xie2, Jianping Lu3, Qiu Hao4, Mingqiang Kang5, Shuchen Chen5, Weifeng Tang5, Hao Ding6, Yu Chen7, Chao Liu8, Haojie Wu9.
Abstract
Genetic polymorphisms of the transcription factor 7-like 2 (TCF7L2) gene may be key agents in the etiology of type 2 diabetes mellitus (T2DM). In the present case-control study, we aimed to assess the possible relationship of TCF7L2 polymorphisms with T2DM and determine the effect of TCF7L2 polymorphisms on the level of fasting plasma glucose (FPG) in Eastern Chinese Han subjects. The TCF7L2 rs7903146C>T and rs290481 T>C polymorphisms were genotyped by SNPscan genotyping assays in 502 subjects with T2DM and 782 non-diabetic controls. After adjusting for age, gender, drinking, smoking and body mass index (BMI), the association of TCF7L2 rs7903146C>T and rs290481 T>C polymorphisms with T2DM was determined. We found that TCF7L2 rs290481 T>C polymorphism increased the susceptibility of T2DM in the overall comparison. In subgroup analyses by age, sex, BMI, alcohol use and smoking status, a significantly increased risk of T2DM was also found in female, older subject and never drinking and BMI < 24 kg/m2 subgroups. The relationship of TCF7L2 rs290481 T>C polymorphism with the biochemistry characteristics in controls was also assessed. We found that TCF7L2 rs290481 T>C polymorphism significantly increased the level of FPG in controls. Our findings suggest that TCF7L2 rs290481 T>C polymorphism is associated with T2DM in Eastern Chinese Han population and links to variations in FPG level. In addition, these relationships are more pronounced in female, older subject and never drinking and BMI < 24 kg/m2 subgroups. A comprehensive fine-mapping study with functional investigation is needed to confirm or refute these potential correlations.Entities:
Keywords: TCF7L2; polymorphism; risk; type 2 diabetes mellitus
Year: 2017 PMID: 29100364 PMCID: PMC5652758 DOI: 10.18632/oncotarget.20300
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Distribution of selected demographic variables and risk factors in T2DM cases and controls
| Variable | Cases (n=502) | Controls (n=782) | |||
|---|---|---|---|---|---|
| n | % | n | % | ||
| Age (years) | 65.20 (±9.51) | 64.67 (±9.80) | 0.347 | ||
| Age (years) | 0.113 | ||||
| < 65 | 227 | 45.22 | 389 | 49.74 | |
| ≥ 65 | 275 | 54.78 | 393 | 50.26 | |
| Sex | 0.819 | ||||
| Male | 332 | 66.14 | 522 | 66.75 | |
| Female | 170 | 33.86 | 260 | 33.25 | |
| Smoking status | 0.264 | ||||
| Never | 333 | 66.33 | 542 | 69.31 | |
| Ever | 169 | 33.67 | 240 | 30.69 | |
| Alcohol use | 0.263 | ||||
| Never | 453 | 90.24 | 690 | 88.24 | |
| Ever | 49 | 9.76 | 92 | 11.76 | |
| BMI (kg/m2) | 24.95 (±3.64) | 23.51 (±2.94) | |||
| BMI (kg/m2) | |||||
| < 24 | 210 | 436 | |||
| ≥ 24 | 292 | 346 | |||
| Systolic pressure (mmHg) | 135.08 (±17.83) | 134.02 (±17.71) | 0.297 | ||
| Diastolic pressure (mmHg) | 79.79 (±10.35) | 80.06 (±10.02) | 0.649 | ||
| FPG (mmol/L) | 8.08 (±2.76) | 5.13 (±0.49) | |||
| Total cholesterol (mmol/L) | 4.61 (±1.24) | 4.88 (±1.02) | |||
| Triglyceride (mmol/L) | 1.74 (±1.14) | 1.55 (±0.96) | 0.001 | ||
| HDL-C (mmol/L) | 1.13 (±0.37) | 1.30 (±0.37) | |||
| LDL-C (mmol/L) | 3.00 (±1.07) | 3.14 (±0.82) | 0.010 | ||
a Two-sided χ2 test and student t test; Bold values are statistically significant (P <0.05); BMI, body mass index; FPG, fasting plasma glucose; HDL-C, high-density lipoprotein cholesterol; LDL-C, low-density lipoprotein cholesterol.
Primary information for TCF7L2 rs7903146C>T and rs290481 T>C polymorphisms
| Genotyped SNPs | Chromosome | Chr Pos (NCBI Build 37) | Region | MAFa for Chinese in database | MAF in our controls (n = 782) | Genotyping method | Genotyping value (%) | |
|---|---|---|---|---|---|---|---|---|
| 10 | 114758349 | Intron 4 | 0.026 | 0.028 | 0.584 | SNPscan | 99.61 | |
| 10 | 114923825 | Intron 13 | 0.405 | 0.379 | 0.057 | SNPscan | 99.30 |
a MAF: minor allele frequency;
b HWE: Hardy–Weinberg equilibrium;
Logistic regression analyses of association between TCF7L2 rs7903146C>T and rs290481 T>C polymorphisms and risk of T2DM
| Genotype | Cases (n=502) | Controls (n=782) | Crude OR (95%CI) | Adjusted ORa (95%CI) | ||||
|---|---|---|---|---|---|---|---|---|
| n | % | n | % | |||||
| CC | 478 | 96.18 | 740 | 94.63 | 1.00 | |||
| CT | 19 | 3.82 | 41 | 5.24 | 0.71(0.41-1.24) | 0.227 | 0.68(0.39-1.18) | 0.170 |
| TT | 0 | 0 | 1 | 0.13 | - | - | - | - |
| CT+TT | 19 | 3.83 | 42 | 5.37 | 0.70(0.40-1.22) | 0.208 | 0.67(0.38-1.17) | 0.160 |
| CC+CT | 497 | 100.00 | 781 | 99.87 | 1.00 | 1.00 | ||
| TT | 0 | 0 | 1 | 0.13 | - | - | - | - |
| T allele | 19 | 1.91 | 43 | 2.75 | ||||
| TT | 172 | 34.61 | 313 | 40.23 | 1.00 | |||
| TC | 246 | 49.50 | 341 | 43.83 | ||||
| CC | 79 | 15.90 | 124 | 15.94 | 1.14(0.82-1.60) | 0.443 | 1.15(0.82-1.62) | 0.413 |
| TC+CC | 325 | 65.39 | 465 | 59.77 | ||||
| TT+TC | 418 | 84.10 | 654 | 84.06 | 1.00 | 1.00 | ||
| CC | 79 | 15.90 | 124 | 15.94 | 1.00(0.73-1.36) | 0.984 | 1.00(0.73-1.36) | 0.979 |
| C allele | 404 | 40.64 | 589 | 37.85 | ||||
a Adjusted for age, sex, BMI, alcohol use and smoking status.
Bold values are statistically significant (P <0.05)
Stratified analyses between TCF7L2 rs290481 T>C polymorphism and T2DM risk by sex, age, smoking status, alcohol consumption and BMI
| Variable | (case/control)a | Adjusted ORb (95% CI); | |||||||
|---|---|---|---|---|---|---|---|---|---|
| TT | TC | CC | TC /CC | TT | TC | CC | TC /CC | CC vs. (TC/TT) | |
| Sex | |||||||||
| Male | 114/201 | 167/223 | 48/95 | 215/318 | 1.00 | 1.33 (0.98-1.81); | 0.90 (0.59-1.37); | 1.21 (0.91-1.62); | 0.77 (0.53-1.13); |
| Female | 58/112 | 79/118 | 31/29 | 110/147 | 1.00 | 1.27 (0.83-1.96); | 1.47(0.98-2.22); | ||
| Age (years) | |||||||||
| <65 | 80/153 | 112/175 | 32/58 | 144/233 | 1.00 | 1.21 (0.84-1.74); | 1.05 (0.63-1.76); | 1.19 (0.84-1.68); | 0.95 (0.59-1.53); |
| ≥65 | 92/160 | 134/166 | 47/66 | 181/232 | 1.00 | 1.27 (0.80-2.01); | 1.05 (0.69-1.60); | ||
| Smoking status | |||||||||
| Never | 114/217 | 160/239 | 57/82 | 217/321 | 1.00 | 1.29 (0.96-1.75); | 1.36 (0.90-2.05); | 1.31 (0.98-1.75); | 1.18 (0.81-1.71); |
| Ever | 58/96 | 86/102 | 22/42 | 108/144 | 1.00 | 1.35 (0.87-2.10); | 0.79 (0.42-1.47); | 1.24 (0.81-1.89); | 0.69 (0.39-1.22); |
| Alcohol use | |||||||||
| Never | 156/280 | 219/297 | 74/110 | 293/407 | 1.00 | 1.22 (0.85-1.74); | 1.05 (0.75-1.45); | ||
| Ever | 16/33 | 27/44 | 5/14 | 32/58 | 1.00 | 1.25 (0.58-2.70); | 0.73 (0.22-2.40); | 1.18 (0.56-2.51); | 0.65 (0.22-1.96); |
| BMI (kg/m2) | |||||||||
| <24 | 65/175 | 108/190 | 35/69 | 143/259 | 1.00 | 1.36 (0.83-2.24); | 1.08 (0.69-1.70); | ||
| ≥24 | 107/138 | 138/151 | 44/55 | 182/206 | 1.00 | 1.17 (0.83-1.64); | 0.99 (0.62-1.59); | 1.13 (0.82-1.57); | 0.92 (0.59-1.42); |
a The genotyping was successful in 502 (99.00%) T2DM cases, and 782 (99.49%) controls for TCF7L2 rs290481 T>C;
b Adjusted for age, sex, BMI, alcohol use and smoking status (besides stratified factors accordingly) in a logistic regression model;
Bold values are statistically significant (P <0.05)
TCF7L2 haplotype frequencies (%) in cases and controls and risk of type 2 diabetes
| Haplotypes | Cases (n=1004) | Controls (n=1564) | Crude OR (95% CI) | |
|---|---|---|---|---|
| n (%) | n (%) | |||
| Trs290481Crs7903146 | 575(58.32) | 933(59.96) | 1.00 | |
| Crs290481Crs7903146 | 392(39.76) | 580(37.28) | 1.10(0.93-1.29) | 0.292 |
| Trs290481Trs7903146 | 13(1.32) | 34(2.19) | 0.62(0.32-1.19) | 0.170 |
| Crs290481Trs7903146 | 6(0.61) | 9(0.58) | 1.08(0.38-3.06) | 1.000 |
Associations of the TCF7L2 rs290481 T>C genetic variants with biochemistry characteristics in healthy controls
| Genotype | Controls (n=782) | FPG (mmol/L) | Total cholesterol (mmol/L) | Triglyceride (mmol/L) | HDL-C (mmol/L) | LDL-C (mmol/L) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| n | % | |||||||||||
| TT | 313 | 40.23 | 5.11±0.49 | 1.0 | 4.86±1.13 | 1.0 | 1.60±1.06 | 1.0 | 1.27±0.36 | 1.0 | 3.13±0.91 | 1.0 |
| TC | 341 | 43.83 | 5.13±0.50 | 0.627 | 4.88±0.95 | 0.794 | 1.53±0.85 | 0.349 | 1.32±0.38 | 0.064 | 3.13±0.74 | 0.966 |
| CC | 124 | 15.94 | 4.96±0.93 | 0.359 | 1.50±0.98 | 0.341 | 1.34±0.36 | 0.062 | 3.19±0.80 | 0.477 | ||
| TC+CC | 465 | 59.77 | 5.15±0.48 | 0.224 | 4.90±0.95 | 0.560 | 1.52±0.89 | 0.258 | 3.15±0.76 | 0.743 | ||
FPG: fasting plasma glucose;
HDL-C, high-density lipoprotein cholesterol;
LDL-C, low-density lipoprotein cholesterol;
Bold values are statistically significant (P <0.05)