Literature DB >> 29098736

Structural characterization of the catalytic γ and regulatory β subunits of phosphorylase kinase in the context of the hexadecameric enzyme complex.

Mary Ashley Rimmer1, Owen W Nadeau1, Antonio Artigues1, Gerald M Carlson1.   

Abstract

In the tightly regulated glycogenolysis cascade, the breakdown of glycogen to glucose-1-phosphate, phosphorylase kinase (PhK) plays a key role in regulating the activity of glycogen phosphorylase. PhK is a 1.3 MDa hexadecamer, with four copies each of four different subunits (α, β, γ and δ), making the study of its structure challenging. Using hydrogen-deuterium exchange, we have analyzed the regulatory β subunit and the catalytic γ subunit in the context of the intact non-activated PhK complex to study the structure of these subunits and identify regions of surface exposure. Our data suggest that within the non-activated complex the γ subunit assumes an activated conformation and are consistent with a previous docking model of the β subunit within the cryoelectron microscopy envelope of PhK.
© 2017 The Protein Society.

Entities:  

Keywords:  calmodulin; hydrogen-deuterium exchange; mass spectrometry; molecular modeling; oligomeric proteins; phosphorylase kinase

Mesh:

Substances:

Year:  2017        PMID: 29098736      PMCID: PMC5775173          DOI: 10.1002/pro.3340

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  63 in total

1.  Structure of the gating domain of a Ca2+-activated K+ channel complexed with Ca2+/calmodulin.

Authors:  M A Schumacher; A F Rivard; H P Bächinger; J P Adelman
Journal:  Nature       Date:  2001-04-26       Impact factor: 49.962

2.  Predicted unfolding order of the 13 alpha-helices in the catalytic domain of glucoamylase from Aspergillus awamori var. X100 by molecular dynamics simulations.

Authors:  Hsuan-Liang Liu; Wen-Chi Wang
Journal:  Biotechnol Prog       Date:  2003 Sep-Oct

3.  Protein hydrogen exchange at residue resolution by proteolytic fragmentation mass spectrometry analysis.

Authors:  Zhong-Yuan Kan; Benjamin T Walters; Leland Mayne; S Walter Englander
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

4.  Solution structure of calmodulin bound to the binding domain of the HIV-1 matrix protein.

Authors:  Jiri Vlach; Alexandra B Samal; Jamil S Saad
Journal:  J Biol Chem       Date:  2014-02-05       Impact factor: 5.157

5.  The regulation of skeletal muscle phosphorylase kinase by Ca2+.

Authors:  C O Brostrom; F L Hunkeler; E G Krebs
Journal:  J Biol Chem       Date:  1971-04-10       Impact factor: 5.157

6.  Activators of phosphorylase kinase alter the cross-linking of its catalytic subunit to the C-terminal one-sixth of its regulatory alpha subunit.

Authors:  O W Nadeau; K W Traxler; L R Fee; B A Baldwin; G M Carlson
Journal:  Biochemistry       Date:  1999-02-23       Impact factor: 3.162

7.  3D mapping of glycogenosis-causing mutations in the large regulatory alpha subunit of phosphorylase kinase.

Authors:  Cathelène Carrière; Slavica Jonic; Jean-Paul Mornon; Isabelle Callebaut
Journal:  Biochim Biophys Acta       Date:  2008-10-07

8.  A model for activation of the hexadecameric phosphorylase kinase complex deduced from zero-length oxidative crosslinking.

Authors:  Jackie A Thompson; Owen W Nadeau; Gerald M Carlson
Journal:  Protein Sci       Date:  2015-09-24       Impact factor: 6.725

9.  I-TASSER server for protein 3D structure prediction.

Authors:  Yang Zhang
Journal:  BMC Bioinformatics       Date:  2008-01-23       Impact factor: 3.169

10.  Deciphering the structural basis of eukaryotic protein kinase regulation.

Authors:  Hiruy S Meharena; Philip Chang; Malik M Keshwani; Krishnadev Oruganty; Aishwarya K Nene; Natarajan Kannan; Susan S Taylor; Alexandr P Kornev
Journal:  PLoS Biol       Date:  2013-10-15       Impact factor: 8.029

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  2 in total

1.  An Integrated Approach for Determining a Protein-Protein Binding Interface in Solution and an Evaluation of Hydrogen-Deuterium Exchange Kinetics for Adjudicating Candidate Docking Models.

Authors:  Mengru Mira Zhang; Brett R Beno; Richard Y-C Huang; Jagat Adhikari; Ekaterina G Deyanova; Jing Li; Guodong Chen; Michael L Gross
Journal:  Anal Chem       Date:  2019-11-22       Impact factor: 6.986

Review 2.  Parameter Reliability and Understanding Enzyme Function.

Authors:  Andrew G McDonald; Keith F Tipton
Journal:  Molecules       Date:  2022-01-01       Impact factor: 4.411

  2 in total

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