Literature DB >> 29096382

A novel approach for dimension reduction of microarray.

Rabia Aziz1, C K Verma2, Namita Srivastava2.   

Abstract

This paper proposes a new hybrid search technique for feature (gene) selection (FS) using Independent component analysis (ICA) and Artificial Bee Colony (ABC) called ICA+ABC, to select informative genes based on a Naïve Bayes (NB) algorithm. An important trait of this technique is the optimization of ICA feature vector using ABC. ICA+ABC is a hybrid search algorithm that combines the benefits of extraction approach, to reduce the size of data and wrapper approach, to optimize the reduced feature vectors. This hybrid search technique is facilitated by evaluating the performance of ICA+ABC on six standard gene expression datasets of classification. Extensive experiments were conducted to compare the performance of ICA+ABC with the results obtained from recently published Minimum Redundancy Maximum Relevance (mRMR) +ABC algorithm for NB classifier. Also to check the performance that how ICA+ABC works as feature selection with NB classifier, compared the combination of ICA with popular filter techniques and with other similar bio inspired algorithm such as Genetic Algorithm (GA) and Particle Swarm Optimization (PSO). The result shows that ICA+ABC has a significant ability to generate small subsets of genes from the ICA feature vector, that significantly improve the classification accuracy of NB classifier compared to other previously suggested methods.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Artificial bee colony (ABC); Cancer classification; Feature selection (FS); Independent component analysis (ICA); Naïve bayes (NB)

Mesh:

Year:  2017        PMID: 29096382     DOI: 10.1016/j.compbiolchem.2017.10.009

Source DB:  PubMed          Journal:  Comput Biol Chem        ISSN: 1476-9271            Impact factor:   2.877


  5 in total

1.  Nature-inspired metaheuristics model for gene selection and classification of biomedical microarray data.

Authors:  Rabia Musheer Aziz
Journal:  Med Biol Eng Comput       Date:  2022-04-11       Impact factor: 2.602

2.  Development of Orthogonal Linear Separation Analysis (OLSA) to Decompose Drug Effects into Basic Components.

Authors:  Tadahaya Mizuno; Setsuo Kinoshita; Takuya Ito; Shotaro Maedera; Hiroyuki Kusuhara
Journal:  Sci Rep       Date:  2019-02-12       Impact factor: 4.379

Review 3.  Independent Component Analysis for Unraveling the Complexity of Cancer Omics Datasets.

Authors:  Nicolas Sompairac; Petr V Nazarov; Urszula Czerwinska; Laura Cantini; Anne Biton; Askhat Molkenov; Zhaxybay Zhumadilov; Emmanuel Barillot; Francois Radvanyi; Alexander Gorban; Ulykbek Kairov; Andrei Zinovyev
Journal:  Int J Mol Sci       Date:  2019-09-07       Impact factor: 5.923

4.  Covid19-Mexican-Patients' Dataset (Covid19MPD) Classification and Prediction Using Feature Importance.

Authors:  Khaled Mohamad Almustafa
Journal:  Concurr Comput       Date:  2021-10-16       Impact factor: 1.831

5.  Deep learning techniques for cancer classification using microarray gene expression data.

Authors:  Surbhi Gupta; Manoj K Gupta; Mohammad Shabaz; Ashutosh Sharma
Journal:  Front Physiol       Date:  2022-09-30       Impact factor: 4.755

  5 in total

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