Literature DB >> 29087352

Theory, simulations, and experiments show that proteins fold by multiple pathways.

William A Eaton1, Peter G Wolynes2,3.   

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Year:  2017        PMID： 29087352      PMCID： PMC5699098          DOI： 10.1073/pnas.1716444114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  11 in total

1.  Native contacts determine protein folding mechanisms in atomistic simulations.

Authors:  Robert B Best; Gerhard Hummer; William A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-15       Impact factor: 11.205

2.  Clash between energy landscape theory and foldon-dependent protein folding.

Authors:  Robert L Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-26       Impact factor: 11.205

3.  The case for defined protein folding pathways.

Authors:  S Walter Englander; Leland Mayne
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-19       Impact factor: 11.205

4.  Chemical physics of protein folding.

Authors:  Peter G Wolynes; William A Eaton; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-29       Impact factor: 11.205

Review 5.  Force as a single molecule probe of multidimensional protein energy landscapes.

Authors:  Gabriel Zoldák; Matthias Rief
Journal:  Curr Opin Struct Biol       Date:  2012-12-30       Impact factor: 6.809

6.  Microscopic interpretation of folding ϕ-values using the transition path ensemble.

Authors:  Robert B Best; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-08       Impact factor: 11.205

7.  Protein folding intermediates: native-state hydrogen exchange.

Authors:  Y Bai; T R Sosnick; L Mayne; S W Englander
Journal:  Science       Date:  1995-07-14       Impact factor: 47.728

8.  Funnels, pathways, and the energy landscape of protein folding: a synthesis.

Authors:  J D Bryngelson; J N Onuchic; N D Socci; P G Wolynes
Journal:  Proteins       Date:  1995-03

9.  Prediction of native-state hydrogen exchange from perfectly funneled energy landscapes.

Authors:  Patricio O Craig; Joachim Lätzer; Patrick Weinkam; Ryan M B Hoffman; Diego U Ferreiro; Elizabeth A Komives; Peter G Wolynes
Journal:  J Am Chem Soc       Date:  2011-10-06       Impact factor: 15.419

10.  Single-molecule chemo-mechanical unfolding reveals multiple transition state barriers in a small single-domain protein.

Authors:  Emily J Guinn; Bharat Jagannathan; Susan Marqusee
Journal:  Nat Commun       Date:  2015-04-17       Impact factor: 14.919
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  16 in total

1.  Disordered proteins follow diverse transition paths as they fold and bind to a partner.

Authors:  Jae-Yeol Kim; Hoi Sung Chung
Journal:  Science       Date:  2020-06-12       Impact factor: 47.728

Review 2.  Protein folding transition path times from single molecule FRET.

Authors:  Hoi Sung Chung; William A Eaton
Journal:  Curr Opin Struct Biol       Date:  2017-11-05       Impact factor: 6.809

3.  The combined force field-sampling problem in simulations of disordered amyloid-β peptides.

Authors:  James Lincoff; Sukanya Sasmal; Teresa Head-Gordon
Journal:  J Chem Phys       Date:  2019-03-14       Impact factor: 3.488

4.  Measuring the average shape of transition paths during the folding of a single biological molecule.

Authors:  Noel Q Hoffer; Krishna Neupane; Andrew G T Pyo; Michael T Woodside
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-05       Impact factor: 11.205

5.  On the Natural Structure of Amino Acid Patterns in Families of Protein Sequences.

Authors:  Pablo Turjanski; Diego U Ferreiro
Journal:  J Phys Chem B       Date:  2018-10-08       Impact factor: 2.991

6.  Reply to Eaton and Wolynes: How do proteins fold?

Authors:  S Walter Englander; Leland Mayne
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-30       Impact factor: 11.205

7.  A folding nucleus and minimal ATP binding domain of Hsp70 identified by single-molecule force spectroscopy.

Authors:  Daniela Bauer; Sarah Meinhold; Roman P Jakob; Johannes Stigler; Ulrich Merkel; Timm Maier; Matthias Rief; Gabriel Žoldák
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-18       Impact factor: 11.205

8.  Diverse Folding Pathways of HIV-1 Protease Monomer on a Rugged Energy Landscape.

Authors:  Janghyun Yoo; John M Louis; Hoi Sung Chung
Journal:  Biophys J       Date:  2019-09-18       Impact factor: 4.033

9.  A 200 nanoseconds all-atom simulation of the pH-dependent EF loop transition in bovine β-lactoglobulin. The role of the orientation of the E89 side chain.

Authors:  Kiara Fenner; Arthur Redgate; Lorenzo Brancaleon
Journal:  J Biomol Struct Dyn       Date:  2020-09-10

10.  Study of protein folding under native conditions by rapidly switching the hydrostatic pressure inside an NMR sample cell.

Authors:  Cyril Charlier; T Reid Alderson; Joseph M Courtney; Jinfa Ying; Philip Anfinrud; Adriaan Bax
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-16       Impact factor: 11.205
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