Literature DB >> 29087338

Protocadherin cis-dimer architecture and recognition unit diversity.

Kerry M Goodman1,2, Rotem Rubinstein3, Hanbin Dan3, Fabiana Bahna2,4, Seetha Mannepalli1,2, Göran Ahlsén2,3,4, Chan Aye Thu1, Rosemary V Sampogna5, Tom Maniatis6,2, Barry Honig6,2,3,4,5, Lawrence Shapiro6,2.   

Abstract

Clustered protocadherins (Pcdhs) mediate numerous neural patterning functions, including neuronal self-recognition and non-self-discrimination to direct self-avoidance among vertebrate neurons. Individual neurons stochastically express a subset of Pcdh isoforms, which assemble to form a stochastic repertoire of cis-dimers. We describe the structure of a PcdhγB7 cis-homodimer, which includes the membrane-proximal extracellular cadherin domains EC5 and EC6. The structure is asymmetric with one molecule contributing interface surface from both EC5 and EC6, and the other only from EC6. Structural and sequence analyses suggest that all Pcdh isoforms will dimerize through this interface. Site-directed mutants at this interface interfere with both Pcdh cis-dimerization and cell surface transport. The structure explains the known restrictions of cis-interactions of some Pcdh isoforms, including α-Pcdhs, which cannot form homodimers. The asymmetry of the interface approximately doubles the size of the recognition repertoire, and restrictions on cis-interactions among Pcdh isoforms define the limits of the Pcdh recognition unit repertoire.

Entities:  

Keywords:  clustered protocadherin; crystal structure; neuronal self-avoidance; protein–protein interaction; self-recognition

Mesh:

Substances:

Year:  2017        PMID: 29087338      PMCID: PMC5699079          DOI: 10.1073/pnas.1713449114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  58 in total

1.  Monoallelic yet combinatorial expression of variable exons of the protocadherin-alpha gene cluster in single neurons.

Authors:  Shigeyuki Esumi; Naoki Kakazu; Yusuke Taguchi; Teruyoshi Hirayama; Ayako Sasaki; Takahiro Hirabayashi; Tsuyoshi Koide; Takashi Kitsukawa; Shun Hamada; Takeshi Yagi
Journal:  Nat Genet       Date:  2005-01-09       Impact factor: 38.330

2.  Protocadherin clusters and cell adhesion kinase regulate dendrite complexity through Rho GTPase.

Authors:  Lun Suo; Huinan Lu; Guoxin Ying; Mario R Capecchi; Qiang Wu
Journal:  J Mol Cell Biol       Date:  2012-06-21       Impact factor: 6.216

3.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

4.  Single-cell identity generated by combinatorial homophilic interactions between α, β, and γ protocadherins.

Authors:  Chan Aye Thu; Weisheng V Chen; Rotem Rubinstein; Maxime Chevee; Holly N Wolcott; Klara O Felsovalyi; Juan Carlos Tapia; Lawrence Shapiro; Barry Honig; Tom Maniatis
Journal:  Cell       Date:  2014-08-28       Impact factor: 41.582

5.  How good are my data and what is the resolution?

Authors:  Philip R Evans; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-13

6.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Authors:  Fabian Sievers; Andreas Wilm; David Dineen; Toby J Gibson; Kevin Karplus; Weizhong Li; Rodrigo Lopez; Hamish McWilliam; Michael Remmert; Johannes Söding; Julie D Thompson; Desmond G Higgins
Journal:  Mol Syst Biol       Date:  2011-10-11       Impact factor: 11.429

7.  Direct and Indirect Regulation of Spinal Cord Ia Afferent Terminal Formation by the γ-Protocadherins.

Authors:  Tuhina Prasad; Joshua A Weiner
Journal:  Front Mol Neurosci       Date:  2011-12-23       Impact factor: 5.639

8.  γ-Protocadherin structural diversity and functional implications.

Authors:  Kerry Marie Goodman; Rotem Rubinstein; Chan Aye Thu; Seetha Mannepalli; Fabiana Bahna; Göran Ahlsén; Chelsea Rittenhouse; Tom Maniatis; Barry Honig; Lawrence Shapiro
Journal:  Elife       Date:  2016-10-26       Impact factor: 8.140

9.  Probabilistic splicing of Dscam1 establishes identity at the level of single neurons.

Authors:  Satoru K Miura; André Martins; Kelvin X Zhang; Brenton R Graveley; S Lawrence Zipursky
Journal:  Cell       Date:  2013-11-21       Impact factor: 41.582

10.  Protocadherins mediate dendritic self-avoidance in the mammalian nervous system.

Authors:  Julie L Lefebvre; Dimitar Kostadinov; Weisheng V Chen; Tom Maniatis; Joshua R Sanes
Journal:  Nature       Date:  2012-08-23       Impact factor: 49.962

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  25 in total

1.  Visualization of clustered protocadherin neuronal self-recognition complexes.

Authors:  Julia Brasch; Kerry M Goodman; Alex J Noble; Micah Rapp; Seetha Mannepalli; Fabiana Bahna; Venkata P Dandey; Tristan Bepler; Bonnie Berger; Tom Maniatis; Clinton S Potter; Bridget Carragher; Barry Honig; Lawrence Shapiro
Journal:  Nature       Date:  2019-04-10       Impact factor: 49.962

2.  Chelicerata sDscam isoforms combine homophilic specificities to define unique cell recognition.

Authors:  Fengyan Zhou; Guozheng Cao; Songjun Dai; Guo Li; Hao Li; Zhu Ding; Shouqing Hou; Bingbing Xu; Wendong You; Gil Wiseglass; Feng Shi; Xiaofeng Yang; Rotem Rubinstein; Yongfeng Jin
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-22       Impact factor: 11.205

3.  Expression of protocadherin-γC4 protein in the rat brain.

Authors:  Celia P Miralles; Michael J Taylor; John Bear; Christopher D Fekete; Shanu George; Yanfang Li; Bevan Bonhomme; Tzu-Ting Chiou; Angel L De Blas
Journal:  J Comp Neurol       Date:  2019-11-06       Impact factor: 3.215

Review 4.  Adhesion Protein Structure, Molecular Affinities, and Principles of Cell-Cell Recognition.

Authors:  Barry Honig; Lawrence Shapiro
Journal:  Cell       Date:  2020-04-30       Impact factor: 41.582

5.  Alpha protocadherins and Pyk2 kinase regulate cortical neuron migration and cytoskeletal dynamics via Rac1 GTPase and WAVE complex in mice.

Authors:  Li Fan; Yichao Lu; Xiulian Shen; Hong Shao; Lun Suo; Qiang Wu
Journal:  Elife       Date:  2018-06-18       Impact factor: 8.140

6.  Collective mechanical responses of cadherin-based adhesive junctions as predicted by simulations.

Authors:  Brandon L Neel; Collin R Nisler; Sanket Walujkar; Raul Araya-Secchi; Marcos Sotomayor
Journal:  Biophys J       Date:  2022-02-10       Impact factor: 4.033

Review 7.  The role of clustered protocadherins in neurodevelopment and neuropsychiatric diseases.

Authors:  Erin Flaherty; Tom Maniatis
Journal:  Curr Opin Genet Dev       Date:  2020-07-14       Impact factor: 5.578

8.  DSCAM promotes self-avoidance in the developing mouse retina by masking the functions of cadherin superfamily members.

Authors:  Andrew M Garrett; Andre Khalil; David O Walton; Robert W Burgess
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-08       Impact factor: 11.205

9.  Novel ultra-rare exonic variants identified in a founder population implicate cadherins in schizophrenia.

Authors:  Todd Lencz; Jin Yu; Raiyan Rashid Khan; Erin Flaherty; Shai Carmi; Max Lam; Danny Ben-Avraham; Nir Barzilai; Susan Bressman; Ariel Darvasi; Judy H Cho; Lorraine N Clark; Zeynep H Gümüş; Joseph Vijai; Robert J Klein; Steven Lipkin; Kenneth Offit; Harry Ostrer; Laurie J Ozelius; Inga Peter; Anil K Malhotra; Tom Maniatis; Gil Atzmon; Itsik Pe'er
Journal:  Neuron       Date:  2021-03-22       Impact factor: 17.173

10.  Crystal structure of the nonclassical cadherin-17 N-terminus and implications for its adhesive binding mechanism.

Authors:  Michelle E Gray; Marcos Sotomayor
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2021-03-04       Impact factor: 1.056

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