| Literature DB >> 29086858 |
Imran Fakhar1, Bohari M Yamin1, Siti Aishah Hasbullah2.
Abstract
Two new symmetrical bis-thiourea,Entities:
Keywords: Binding study; Bis-thiourea isomers; Metal cations; α- and β-alanine
Year: 2017 PMID: 29086858 PMCID: PMC5544659 DOI: 10.1186/s13065-017-0304-2
Source DB: PubMed Journal: Chem Cent J ISSN: 1752-153X Impact factor: 4.215
Scheme 1Synthesis of bis-thiourea alanine based isomers 1A and 1B
Crystal data and structure refinement for isomer 1B
| Identification code | boly370_0 m |
| Empirical formula | C16H18N4O6S2 |
| Formula weight | 426.46 |
| Temperature | 303(2) K |
| Wavelength | 0.71073 Å |
| Crystal system | Monoclinic |
| Space group | C2/c |
| Unit cell dimensions | a = 26.9433(13) Å; α = 90° |
| b = 4.7668(2) Å; β = 100.926(2)° | |
| c = 15.1750(7) Å; γ = 90° | |
| Volume | 1913.65(15) Å3 |
| Z | 4 |
| Density (calculated) | 1.480 Mg m−3 |
| Absorption coefficient | 0.320 mm−1 |
| F(000) | 888 |
| Crystal size | 0.49 × 0.36 × 0.11 mm3 |
| Theta range for data collection | 2.87–28.31° |
| Index ranges | −35 <= h <= 35, −6 <= k <= 6, −18 <= l <= 20 |
| Reflections collected | 29,791 |
| Independent reflections | 2376 [R(int) = 0.0372] |
| Completeness to theta = 28.31° | 99.7% |
| Absorption correction | Semi-empirical from equivalents |
| Max. and min. transmission | 0.9656 and 0.8588 |
| Refinement method | Full-matrix least-squares on F2 |
| Data/restraints/parameters | 2376/0/128 |
| Goodness-of-fit on F2 | 1.064 |
| Final R indices [I >2 sigma(I)] | R1 = 0.0538, wR2 = 0.1507 |
| R indices (all data) | R1 = 0.0673, wR2 = 0.1618 |
| Largest diff. peak and hole | 0.335 and −0.357 e Å−3 |
Fig. 1ORTEP diagram of the 3, 3′-[{(terephthaloylbis(azanediyl)bis(carbonothioyl)bis (azanediyl)}dipropanoicacid]. 1B was drawn at 50% probability displacement ellipsoids. The dashed line indicates the intramolecular hydrogen bond
Selected bond lengths (Å) and bond angles (°) for isomer 1B
| Bond | Length (Å) | Bond | Angles (°) |
|---|---|---|---|
| S(1)–C(4) | 1.672(2) | C(4)–N(1)–C(3) | 123.7(2) |
| O(1)–C(1) | 1.212(3) | C(5)–N(2)–C(4) | 126.52(18) |
| O(2)–C(1) | 1.313(3) | O(1)–C(1)–O(2) | 122.1(2) |
| O(3)–C(5) | 1.214(3) | O(1)–C(1)–C(2) | 124.6(2) |
| N(1)–C(4) | 1.316(3) | O(2)–C(1)–C(2) | 113.26(19) |
| N(1)–C(3) | 1.464(3) | C(1)–C(2)–C(3) | 112.6(2) |
| N(2)–C(5) | 1.377(3) | N(1)–C(3)–C(2) | 111.31(19) |
| N(2)–C(4) | 1.399(2) | N(1)–C(4)–N(2) | 116.77(18) |
| C(1)–C(2) | 1.494(4) | N(1)–C(4)–S(1) | 122.86(16) |
| C(2)–C(3) | 1.514(3) | N(2)–C(4)–S(1) | 120.35(16) |
| C(5)–C(6) | 1.500(3) | O(3)–C(5)–N(2) | 122.32(18) |
| C(6)–C(7) | 1.371(3) | O(3)–C(5)–C(6) | 120.38(19) |
| C(6)–C(8) | 1.377(3) | N(2)–C(5)–C(6) | 117.30(19) |
| C(7)–C(8)#1 | 1.382(3) | C(7)–C(6)–C(8) | 118.52(19) |
| C(8)–C(7)#1 | 1.382(3) | C(7)–C(6)–C(5) | 124.88(18) |
| C(8)–C(6)–C(5) | 116.59(19) |
Symmetry transformations used to generate equivalent atoms: #1 −x,−y,−z
Hydrogen bonds for isomer 1B [(Å) and (°)]
| D–H…A | d(D–H) | d(H…A) | d(D…A) | <(DHA) |
|---|---|---|---|---|
| N(2)–H(2C)…O(1) | 0.86 | 2.28 | 3.126(2) | 168 |
| N(1)–H(1)…O(3) | 0.86 | 1.92 | 2.603(2) | 134.9 |
| O(2)–H(2)…S(1) | 0.82 | 2.26 | 3.072(2) | 174 |
| C(3)–H(3B)…S(1) | 0.97 | 2.64 | 3.042(3) | 105 |
| C(7)–H(7)…O(1) | 0.93 | 2.20 | 3.123(3) | 174 |
| C(8)–H(8)…O(3) | 0.93 | 2.41 | 2.737(3) | 100 |
Symmetry transformations used to generate equivalent atoms: #1 −x, −y, −z # 2 x, −y + 1, z − 1/2 #3 x, −y + 1, z+
Fig. 2Molecular packing of 1B viewed down the b axis. Dashed lines denote C–H….O, O–H….S and N–H….O hydrogen bonds
Fig. 3Graphical representation of two-site binding
Fig. 4Interactions of isomer 1A with various metal ions and tetrabutylammonium ions
Fig. 5Interactions of isomer 1B with various metal ions and tetrabutylammonium ions
Fig. 6Titration of isomer 1A vs Fe (Inset Binding behavior + stoichiometry)
Fig. 7Titration of isomer 1B vs Fe (Inset Binding behavior + stoichiometry)
Fig. 10Titration of isomer 1A vs Cu (Inset Binding behavior + stoichiometry)
Fig. 11Titration of isomer 1B vs Cu (Inset Binding behavior + stoichiometry)
Fig. 16Titration of isomer 1A vs Ag (Inset Binding behavior + stoichiometry)
Fig. 17Titration of isomer 1B vs Ag (Inset Binding behavior + stoichiometry)
Correlation coefficient, detection limit, stoichiometry of complexation and binding constants of both Isomers with metal ions
| Lig-metal ion | Correlation coefficient | Detection limit | Complexation stoichiometry | Dissociation constant | |
|---|---|---|---|---|---|
| Kd1 | Kd2 | ||||
| Isomer1A-Fe3+ | 0.982 | 1.30 × 10−1 M | 1:4 | 5.45 × 10−17 M | 6.760 M |
| Isomer1B-Fe3+ | 0.967 | 2.40 × 10−1 M | 1:4 | 3.81 × 10−17 M | 4.539 M |
| Isomer1A-Fe2+ | 0.998 | 1.50 × 10−1 M | 1:4 | 1.42 × 10−18 M | 6.835 M |
| Isomer1B-Fe2+ | 0.936 | 3.88 × 10−1 M | 1:4 | 1.15 × 10−17 M | 7.380 M |
| Isomer1A-Cu2+ | 0.998 | 1.90 × 10−1 M | 1:4 | 6.04 × 10−18 M | 6.149 M |
| Isomer1B-Cu2+ | 0.967 | 3.16 × 10−1 M | 1:4 | 5.92 × 10−17 M | 9.852 M |
| Isomer1A-Pb2+ | 0.982 | 1.14 × 10−1 M | 1:4 | 2.84 × 10−17 M | 1.269 M |
| Isomer1B-Pb2+ | 0.977 | 1.83 × 10−1 M | 1:4 | 5.69 × 10−17 M | 5.310 M |
| Isomer1A-Hg2+ | 0.967 | 9.16 × 10−2 M | 1:4 | 9.57 × 10−17 M | 5.201 M |
| Isomer1B-Hg2+ | 0.98 | 2.10 × 10−1 M | 1:4 | 5.56 × 10−18 M | 7.916 M |
| Isomer1A-Ag+ | 0.997 | 2.02 × 10−1 M | 1:4 | 6.87 × 10−18 M | 4.557 M |
| Isomer1B-Ag+ | 0.989 | 7.23 × 10−1 M | 1:4 | 1.64 × 10−17 M | 1.717 M |
Fig. 8Titration of isomer 1A vs Fe (Inset Binding behavior + stoichiometry)
Fig. 9Titration of isomer 1B vs Fe (Inset Binding behavior + stoichiometry)
Fig. 12Titration of isomer 1A vs Pb (Inset Binding behavior + stoichiometry)
Fig. 13Titration of isomer 1B vs Pb (Inset Binding behavior + stoichiometry)
Fig. 14Titration of isomer 1A vs Hg (Inset Binding behavior + stoichiometry)
Fig. 15Titration of isomer 1B vs Hg (Inset Binding behavior + stoichiometry)