Literature DB >> 29085767

Novel dihydropyrimidine derivatives as potential HDAC inhibitors: in silico study.

Ganapathi Thipparapu1, Rajanna Ajumeera1, Vijayalakshmi Venkatesan1.   

Abstract

Dihydropyrimidine derivatives possess many biological activities due to presence of pyrimidine ring structure in various nucleic acids, vitamins, coenzymes, uric acid and their derivatives. They have possessed broad spectrum actions like antibacterial, antifungal, antiviral, anticancer and antihypertensive etc. Before synthesis of compounds, it is good to predict biological activity using in silico methods. Here, we have selected some of N (3a-f) and O (4a-f) mannich bases of dihydro pyrimidine derivatives emphasized on histone deacetylase 4 (HDAC-4) inhibitions activity. We have used the different software tools like Lipinski's rule of five; pass online; osiris property explorer and docking studies to predict anti cancer activity. All the selected compounds exhibited potential drug like molecule with anti cancer activity. Among all compound the substitution with methoxy group (3c) exhibited more drugs like property and substation with hydrogens (4a) showed high anti neoplastic activity; whereas substitution with dichloro groups (4e) showed more drug docking scores. These were compared with standard drugs tamoxifen and 5-flourouracil. The approach of predicting anticancer activity using in silico method may be more useful to select and synthesis novel compounds in research as well as in industry.

Entities:  

Keywords:  Dihydropyrimidines; HDAC-4 enzyme; In Silico; Lipinski’s rule; Osiris property explorer; Pass online

Year:  2017        PMID: 29085767      PMCID: PMC5639823          DOI: 10.1007/s40203-017-0030-4

Source DB:  PubMed          Journal:  In Silico Pharmacol        ISSN: 2193-9616


  26 in total

1.  A 'rule of three' for fragment-based lead discovery?

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Journal:  Drug Discov Today       Date:  2003-10-01       Impact factor: 7.851

2.  The PDBbind database: collection of binding affinities for protein-ligand complexes with known three-dimensional structures.

Authors:  Renxiao Wang; Xueliang Fang; Yipin Lu; Shaomeng Wang
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Review 3.  Structural genomics-impact on biomedicine and drug discovery.

Authors:  Johan Weigelt
Journal:  Exp Cell Res       Date:  2010-03-06       Impact factor: 3.905

Review 4.  Computational drug discovery.

Authors:  Si-Sheng Ou-Yang; Jun-Yan Lu; Xiang-Qian Kong; Zhong-Jie Liang; Cheng Luo; Hualiang Jiang
Journal:  Acta Pharmacol Sin       Date:  2012-08-27       Impact factor: 6.150

5.  Synthesis and antitubercular activity of 2-(substituted phenyl/benzyl-amino)-6-(4-chlorophenyl)-5-(methoxycarbonyl)-4-methyl-3,6-dihydropyrimidin-1-ium chlorides.

Authors:  Venugopala K Narayanaswamy; Susanta K Nayak; Melendhran Pillay; Renuka Prasanna; Yacoob M Coovadia; Bharti Odhav
Journal:  Chem Biol Drug Des       Date:  2012-11-14       Impact factor: 2.817

6.  Lead- and drug-like compounds: the rule-of-five revolution.

Authors:  Christopher A Lipinski
Journal:  Drug Discov Today Technol       Date:  2004-12

7.  Synthesis of new pyrimidine derivatives with evaluation of their anti-inflammatory and analgesic activities.

Authors:  Zienab M Nofal; Hoda H Fahmy; Eman S Zarea; Wafaa El-Eraky
Journal:  Acta Pol Pharm       Date:  2011 Jul-Aug       Impact factor: 0.330

Review 8.  Principles of early drug discovery.

Authors:  J P Hughes; S Rees; S B Kalindjian; K L Philpott
Journal:  Br J Pharmacol       Date:  2011-03       Impact factor: 8.739

9.  A copper(I)-catalyzed 1,2,3-triazole azide-alkyne click compound is a potent inhibitor of a multidrug-resistant HIV-1 protease variant.

Authors:  Michael J Giffin; Holly Heaslet; Ashraf Brik; Ying-Chuan Lin; Gabrielle Cauvi; Chi-Huey Wong; Duncan E McRee; John H Elder; C David Stout; Bruce E Torbett
Journal:  J Med Chem       Date:  2008-09-30       Impact factor: 7.446

10.  Design, synthesis and biological evaluation of novel pyridine derivatives as anticancer agents and phosphodiesterase 3 inhibitors.

Authors:  Ashraf H Abadi; Tamer M Ibrahim; Khaled M Abouzid; Jochen Lehmann; Heather N Tinsley; Bernard D Gary; Gary A Piazza
Journal:  Bioorg Med Chem       Date:  2009-07-03       Impact factor: 3.641

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