Literature DB >> 29085239

More Accurate Oral Cancer Screening with Fewer Salivary Biomarkers.

James Michael Menke1, Md Shahidul Ahsan2, Suan Phaik Khoo3.   

Abstract

Signal detection and Bayesian inferential tools were applied to salivary biomarkers to improve screening accuracy and efficiency in detecting oral squamous cell carcinoma (OSCC). Potential cancer biomarkers are identified by significant differences in assay concentrations, receiver operating characteristic areas under the curve (AUCs), sensitivity, and specificity. However, the end goal is to report to individual patients their risk of having disease given positive or negative test results. Likelihood ratios (LRs) and Bayes factors (BFs) estimate evidential support and compile biomarker information to optimize screening accuracy. In total, 26 of 77 biomarkers were mentioned as having been tested at least twice in 137 studies and published in 16 summary papers through 2014. Studies represented 10 212 OSCC and 25 645 healthy patients. The measure of biomarker and panel information value was number of biomarkers needed to approximate 100% positive predictive value (PPV). As few as 5 biomarkers could achieve nearly 100% PPV for a disease prevalence of 0.2% when biomarkers were ordered from highest to lowest LR. When sequentially interpreting biomarker tests, high specificity was more important than test sensitivity in achieving rapid convergence toward a high PPV. Biomarkers ranked from highest to lowest LR were more informative and easier to interpret than AUC or Youden index. The proposed method should be applied to more recently published biomarker data to test its screening value.

Entities:  

Keywords:  Bayesian analysis; biomarkers; cancer; evidence synthesis; likelihood ratio; signal detection

Year:  2017        PMID: 29085239      PMCID: PMC5648090          DOI: 10.1177/1179299X17732007

Source DB:  PubMed          Journal:  Biomark Cancer        ISSN: 1179-299X


  84 in total

Review 1.  Phases of biomarker development for early detection of cancer.

Authors:  M S Pepe; R Etzioni; Z Feng; J D Potter; M L Thompson; M Thornquist; M Winget; Y Yasui
Journal:  J Natl Cancer Inst       Date:  2001-07-18       Impact factor: 13.506

2.  Development of transcriptomic biomarker signature in human saliva to detect lung cancer.

Authors:  Lei Zhang; Hua Xiao; Hui Zhou; Silverio Santiago; Jay M Lee; Edward B Garon; Jieping Yang; Ole Brinkmann; Xinmin Yan; David Akin; David Chia; David Elashoff; No-Hee Park; David T W Wong
Journal:  Cell Mol Life Sci       Date:  2012-06-12       Impact factor: 9.261

3.  Estimating the diagnostic likelihood ratio of a continuous marker.

Authors:  Wen Gu; Margaret Sullivan Pepe
Journal:  Biostatistics       Date:  2010-07-16       Impact factor: 5.899

4.  Assessing risk prediction models in case-control studies using semiparametric and nonparametric methods.

Authors:  Ying Huang; Margaret Sullivan Pepe
Journal:  Stat Med       Date:  2010-06-15       Impact factor: 2.373

5.  Introduction to Bayesian methods II: fundamental concepts.

Authors:  Thomas A Louis
Journal:  Clin Trials       Date:  2005       Impact factor: 2.486

6.  Integrating the predictiveness of a marker with its performance as a classifier.

Authors:  Margaret S Pepe; Ziding Feng; Ying Huang; Gary Longton; Ross Prentice; Ian M Thompson; Yingye Zheng
Journal:  Am J Epidemiol       Date:  2007-11-02       Impact factor: 4.897

Review 7.  Global epidemiology of oral and oropharyngeal cancer.

Authors:  Saman Warnakulasuriya
Journal:  Oral Oncol       Date:  2008-09-18       Impact factor: 5.337

8.  Biases introduced by choosing controls to match risk factors of cases in biomarker research.

Authors:  Margaret Sullivan Pepe; Jing Fan; Christopher W Seymour; Christopher Li; Ying Huang; Ziding Feng
Journal:  Clin Chem       Date:  2012-06-22       Impact factor: 8.327

9.  Conditional estimation after a two-stage diagnostic biomarker study that allows early termination for futility.

Authors:  Joseph S Koopmeiners; Ziding Feng; Margaret Sullivan Pepe
Journal:  Stat Med       Date:  2012-01-12       Impact factor: 2.373

10.  Salivary transcriptomic biomarkers for detection of resectable pancreatic cancer.

Authors:  Lei Zhang; James J Farrell; Hui Zhou; David Elashoff; David Akin; No-Hee Park; David Chia; David T Wong
Journal:  Gastroenterology       Date:  2009-11-18       Impact factor: 22.682

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