Literature DB >> 29082294

Nuclei Isolation from Nematode Ascaris.

Yuanyuan Kang1, Jianbin Wang1, Richard E Davis1.   

Abstract

Preparing nuclei is necessary in a variety of experimental paradigms to study nuclear processes. In this protocol, we describe a method for rapid preparation of large number of relatively pure nuclei from Ascaris embryos or tissues that are ready to be used for further experiments such as chromatin isolation and ChIP-seq, nuclear RNA analyses, or preparation of nuclear extracts (Kang et al., 2016; Wang et al., 2016).

Entities:  

Keywords:  Ascaris; Embryos; Nematodes; Nuclei isolation; Tissue

Year:  2017        PMID: 29082294      PMCID: PMC5659632          DOI: 10.21769/BioProtoc.2262

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  7 in total

1.  Nematode m7GpppG and m3(2,2,7)GpppG decapping: activities in Ascaris embryos and characterization of C. elegans scavenger DcpS.

Authors:  Leah S Cohen; Claudette Mikhli; Cassandra Friedman; Marzena Jankowska-Anyszka; Janusz Stepinski; Edward Darzynkiewicz; Richard E Davis
Journal:  RNA       Date:  2004-10       Impact factor: 4.942

2.  Affinity purification of protein complexes in C. elegans.

Authors:  Esther Zanin; Julien Dumont; Reto Gassmann; Iain Cheeseman; Paul Maddox; Shirin Bahmanyar; Ana Carvalho; Sherry Niessen; John R Yates; Karen Oegema; Arshad Desai
Journal:  Methods Cell Biol       Date:  2011       Impact factor: 1.441

3.  Contribution of trans-splicing, 5' -leader length, cap-poly(A) synergism, and initiation factors to nematode translation in an Ascaris suum embryo cell-free system.

Authors:  Sabbi Lall; Cassandra C Friedman; Marzena Jankowska-Anyszka; Janusz Stepinski; Edward Darzynkiewicz; Richard E Davis
Journal:  J Biol Chem       Date:  2004-08-20       Impact factor: 5.157

4.  Differential Chromosomal Localization of Centromeric Histone CENP-A Contributes to Nematode Programmed DNA Elimination.

Authors:  Yuanyuan Kang; Jianbin Wang; Ashley Neff; Stella Kratzer; Hiroshi Kimura; Richard E Davis
Journal:  Cell Rep       Date:  2016-08-18       Impact factor: 9.423

5.  Transcription in pronuclei and one- to four-cell embryos drives early development in a nematode.

Authors:  Jianbin Wang; Julianne Garrey; Richard E Davis
Journal:  Curr Biol       Date:  2013-12-26       Impact factor: 10.834

6.  Analysis of C. elegans intestinal gene expression and polyadenylation by fluorescence-activated nuclei sorting and 3'-end-seq.

Authors:  Simon Haenni; Zhe Ji; Mainul Hoque; Nigel Rust; Helen Sharpe; Ralf Eberhard; Cathy Browne; Michael O Hengartner; Jane Mellor; Bin Tian; André Furger
Journal:  Nucleic Acids Res       Date:  2012-03-29       Impact factor: 16.971

7.  A native chromatin purification system for epigenomic profiling in Caenorhabditis elegans.

Authors:  Siew Loon Ooi; Jorja G Henikoff; Steven Henikoff
Journal:  Nucleic Acids Res       Date:  2009-12-04       Impact factor: 16.971

  7 in total
  2 in total

1.  Comprehensive Chromosome End Remodeling during Programmed DNA Elimination.

Authors:  Jianbin Wang; Giovana M B Veronezi; Yuanyuan Kang; Maxim Zagoskin; Eileen T O'Toole; Richard E Davis
Journal:  Curr Biol       Date:  2020-07-16       Impact factor: 10.834

2.  Genome Analysis of Programmed DNA Elimination in Parasitic Nematodes.

Authors:  Jianbin Wang
Journal:  Methods Mol Biol       Date:  2021
  2 in total

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