Literature DB >> 29081385

Toward multimodal signal detection of adverse drug reactions.

Rave Harpaz1, William DuMouchel2, Martijn Schuemie3, Olivier Bodenreider4, Carol Friedman5, Eric Horvitz6, Anna Ripple4, Alfred Sorbello7, Ryen W White6, Rainer Winnenburg8, Nigam H Shah8.   

Abstract

OBJECTIVE: Improving mechanisms to detect adverse drug reactions (ADRs) is key to strengthening post-marketing drug safety surveillance. Signal detection is presently unimodal, relying on a single information source. Multimodal signal detection is based on jointly analyzing multiple information sources. Building on, and expanding the work done in prior studies, the aim of the article is to further research on multimodal signal detection, explore its potential benefits, and propose methods for its construction and evaluation.
MATERIAL AND METHODS: Four data sources are investigated; FDA's adverse event reporting system, insurance claims, the MEDLINE citation database, and the logs of major Web search engines. Published methods are used to generate and combine signals from each data source. Two distinct reference benchmarks corresponding to well-established and recently labeled ADRs respectively are used to evaluate the performance of multimodal signal detection in terms of area under the ROC curve (AUC) and lead-time-to-detection, with the latter relative to labeling revision dates.
RESULTS: Limited to our reference benchmarks, multimodal signal detection provides AUC improvements ranging from 0.04 to 0.09 based on a widely used evaluation benchmark, and a comparative added lead-time of 7-22 months relative to labeling revision dates from a time-indexed benchmark.
CONCLUSIONS: The results support the notion that utilizing and jointly analyzing multiple data sources may lead to improved signal detection. Given certain data and benchmark limitations, the early stage of development, and the complexity of ADRs, it is currently not possible to make definitive statements about the ultimate utility of the concept. Continued development of multimodal signal detection requires a deeper understanding the data sources used, additional benchmarks, and further research on methods to generate and synthesize signals.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Adverse drug reactions; Drug safety; Multimodal; Pharmacovigilance; Signal detection

Mesh:

Year:  2017        PMID: 29081385     DOI: 10.1016/j.jbi.2017.10.013

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  11 in total

1.  Learning predictive models of drug side-effect relationships from distributed representations of literature-derived semantic predications.

Authors:  Justin Mower; Devika Subramanian; Trevor Cohen
Journal:  J Am Med Inform Assoc       Date:  2018-10-01       Impact factor: 4.497

2.  Complementing Observational Signals with Literature-Derived Distributed Representations for Post-Marketing Drug Surveillance.

Authors:  Justin Mower; Trevor Cohen; Devika Subramanian
Journal:  Drug Saf       Date:  2020-01       Impact factor: 5.606

3.  Improving Pharmacovigilance Signal Detection from Clinical Notes with Locality Sensitive Neural Concept Embeddings.

Authors:  Justin Mower; Elmer Bernstam; Hua Xu; Sahiti Myneni; Devika Subramanian; Trevor Cohen
Journal:  AMIA Annu Symp Proc       Date:  2022-05-23

4.  "Artificial Intelligence" for Pharmacovigilance: Ready for Prime Time?

Authors:  Robert Ball; Gerald Dal Pan
Journal:  Drug Saf       Date:  2022-05-17       Impact factor: 5.228

5.  Augmenting aer2vec: Enriching distributed representations of adverse event report data with orthographic and lexical information.

Authors:  Xiruo Ding; Justin Mower; Devika Subramanian; Trevor Cohen
Journal:  J Biomed Inform       Date:  2021-06-08       Impact factor: 8.000

6.  Combining Social Media and FDA Adverse Event Reporting System to Detect Adverse Drug Reactions.

Authors:  Ying Li; Antonio Jimeno Yepes; Cao Xiao
Journal:  Drug Saf       Date:  2020-09       Impact factor: 5.606

7.  Early Detection of Adverse Drug Reactions in Social Health Networks: A Natural Language Processing Pipeline for Signal Detection.

Authors:  Azadeh Nikfarjam; Julia D Ransohoff; Alison Callahan; Erik Jones; Brian Loew; Bernice Y Kwong; Kavita Y Sarin; Nigam H Shah
Journal:  JMIR Public Health Surveill       Date:  2019-06-03

8.  Profiling off-label prescriptions in cancer treatment using social health networks.

Authors:  Azadeh Nikfarjam; Julia D Ransohoff; Alison Callahan; Vladimir Polony; Nigam H Shah
Journal:  JAMIA Open       Date:  2019-07-22

9.  A Social Media Study on the Effects of Psychiatric Medication Use.

Authors:  Koustuv Saha; Benjamin Sugar; John Torous; Bruno Abrahao; Emre Kıcıman; Munmun De Choudhury
Journal:  Proc Int AAAI Conf Weblogs Soc Media       Date:  2019-06-07

10.  Combining a Pharmacological Network Model with a Bayesian Signal Detection Algorithm to Improve the Detection of Adverse Drug Events.

Authors:  Xiangmin Ji; Guimei Cui; Chengzhen Xu; Jie Hou; Yunfei Zhang; Yan Ren
Journal:  Front Pharmacol       Date:  2022-01-03       Impact factor: 5.810

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