Literature DB >> 29077790

Precision medicine needs pioneering clinical bioinformaticians.

Gonzalo Gómez-López1, Joaquín Dopazo2, Juan C Cigudosa3, Alfonso Valencia4, Fátima Al-Shahrour1.   

Abstract

Success in precision medicine depends on accessing high-quality genetic and molecular data from large, well-annotated patient cohorts that couple biological samples to comprehensive clinical data, which in conjunction can lead to effective therapies. From such a scenario emerges the need for a new professional profile, an expert bioinformatician with training in clinical areas who can make sense of multi-omics data to improve therapeutic interventions in patients, and the design of optimized basket trials. In this review, we first describe the main policies and international initiatives that focus on precision medicine. Secondly, we review the currently ongoing clinical trials in precision medicine, introducing the concept of 'precision bioinformatics', and we describe current pioneering bioinformatics efforts aimed at implementing tools and computational infrastructures for precision medicine in health institutions around the world. Thirdly, we discuss the challenges related to the clinical training of bioinformaticians, and the urgent need for computational specialists capable of assimilating medical terminologies and protocols to address real clinical questions. We also propose some skills required to carry out common tasks in clinical bioinformatics and some tips for emergent groups. Finally, we explore the future perspectives and the challenges faced by precision medicine bioinformatics.
© The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  clinical bioinformatician; clinical bioinformatics; computing infrastructures; genomic report; precision medicine; training

Mesh:

Year:  2019        PMID: 29077790     DOI: 10.1093/bib/bbx144

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  11 in total

1.  Cardioinformatics: the nexus of bioinformatics and precision cardiology.

Authors:  Bohdan B Khomtchouk; Diem-Trang Tran; Kasra A Vand; Matthew Might; Or Gozani; Themistocles L Assimes
Journal:  Brief Bioinform       Date:  2020-12-01       Impact factor: 11.622

Review 2.  Global Trends of Stem Cell Precision Medicine Research (2018-2022): A Bibliometric Analysis.

Authors:  Muge Liu; Fan Yang; Yingbin Xu
Journal:  Front Surg       Date:  2022-06-23

3.  Genomic sequencing in oncology: Considerations for integration in routine cancer care.

Authors:  Belinda Rahman; Alastair Lamb; Andrew Protheroe; Ketan Shah; Joyce Solomons; Jonathan Williams; Elizabeth Ormondroyd
Journal:  Eur J Cancer Care (Engl)       Date:  2022-04-05       Impact factor: 2.328

4.  PanDrugs: a novel method to prioritize anticancer drug treatments according to individual genomic data.

Authors:  Elena Piñeiro-Yáñez; Miguel Reboiro-Jato; Gonzalo Gómez-López; Javier Perales-Patón; Kevin Troulé; José Manuel Rodríguez; Héctor Tejero; Takeshi Shimamura; Pedro Pablo López-Casas; Julián Carretero; Alfonso Valencia; Manuel Hidalgo; Daniel Glez-Peña; Fátima Al-Shahrour
Journal:  Genome Med       Date:  2018-05-31       Impact factor: 11.117

Review 5.  Study designs for clinical trials applied to personalised medicine: a scoping review.

Authors:  Cecilia Superchi; Florie Brion Bouvier; Chiara Gerardi; Montserrat Carmona; Lorena San Miguel; Luis María Sánchez-Gómez; Iñaki Imaz-Iglesia; Paula Garcia; Jacques Demotes; Rita Banzi; Raphaël Porcher
Journal:  BMJ Open       Date:  2022-05-06       Impact factor: 3.006

6.  Editorial: Curriculum Applications in Microbiology: Bioinformatics in the Classroom.

Authors:  Melanie Crystal Melendrez; Sophie Shaw; C Titus Brown; Brad W Goodner; Christopher Kvaal
Journal:  Front Microbiol       Date:  2021-07-01       Impact factor: 5.640

Review 7.  H3Africa: current perspectives.

Authors:  Nicola Mulder; Alash'le Abimiku; Sally N Adebamowo; Jantina de Vries; Alice Matimba; Paul Olowoyo; Michele Ramsay; Michelle Skelton; Dan J Stein
Journal:  Pharmgenomics Pers Med       Date:  2018-04-10

8.  SwissMTB: establishing comprehensive molecular cancer diagnostics in Swiss clinics.

Authors:  Franziska Singer; Anja Irmisch; Nora C Toussaint; Linda Grob; Jochen Singer; Thomas Thurnherr; Niko Beerenwinkel; Mitchell P Levesque; Reinhard Dummer; Luca Quagliata; Sacha I Rothschild; Andreas Wicki; Christian Beisel; Daniel J Stekhoven
Journal:  BMC Med Inform Decis Mak       Date:  2018-10-29       Impact factor: 2.796

9.  In Silico Drug Prescription for Targeting Cancer Patient Heterogeneity and Prediction of Clinical Outcome.

Authors:  Elena Piñeiro-Yáñez; María José Jiménez-Santos; Gonzalo Gómez-López; Fátima Al-Shahrour
Journal:  Cancers (Basel)       Date:  2019-09-13       Impact factor: 6.639

10.  The use of PanDrugs to prioritize anticancer drug treatments in a case of T-ALL based on individual genomic data.

Authors:  Pablo Fernández-Navarro; Pilar López-Nieva; Elena Piñeiro-Yañez; Gonzalo Carreño-Tarragona; Joaquín Martinez-López; Raúl Sánchez Pérez; Ángel Aroca; Fátima Al-Shahrour; María Ángeles Cobos-Fernández; José Fernández-Piqueras
Journal:  BMC Cancer       Date:  2019-10-26       Impact factor: 4.430

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