Literature DB >> 29076547

The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project.

David J Weston1,2, Merritt R Turetsky3, Matthew G Johnson4, Gustaf Granath5, Zoë Lindo6, Lisa R Belyea7, Steven K Rice8, David T Hanson9, Katharina A M Engelhardt10, Jeremy Schmutz11,12, Ellen Dorrepaal13, Eugénie S Euskirchen14, Hans K Stenøien15, Péter Szövényi16, Michelle Jackson17, Bryan T Piatkowski17, Wellington Muchero1, Richard J Norby2,18, Joel E Kostka19, Jennifer B Glass19, Håkan Rydin20, Juul Limpens21, Eeva-Stiina Tuittila22, Kristian K Ullrich23, Alyssa Carrell1, Brian W Benscoter24, Jin-Gui Chen1, Tobi A Oke3, Mats B Nilsson25, Priya Ranjan26, Daniel Jacobson1, Erik A Lilleskov27, R S Clymo28, A Jonathan Shaw17.   

Abstract

Considerable progress has been made in ecological and evolutionary genetics with studies demonstrating how genes underlying plant and microbial traits can influence adaptation and even 'extend' to influence community structure and ecosystem level processes. Progress in this area is limited to model systems with deep genetic and genomic resources that often have negligible ecological impact or interest. Thus, important linkages between genetic adaptations and their consequences at organismal and ecological scales are often lacking. Here we introduce the Sphagnome Project, which incorporates genomics into a long-running history of Sphagnum research that has documented unparalleled contributions to peatland ecology, carbon sequestration, biogeochemistry, microbiome research, niche construction, and ecosystem engineering. The Sphagnome Project encompasses a genus-level sequencing effort that represents a new type of model system driven not only by genetic tractability, but by ecologically relevant questions and hypotheses.
© 2017 UT-Battelle New Phytologist © 2017 New Phytologist Trust.

Entities:  

Keywords:  zzm321990Sphagnumzzm321990; Sphagnome; ecological genomics; ecosystem engineering; evolutionary genetics; genome sequencing; niche construction; peatlands

Mesh:

Year:  2017        PMID: 29076547     DOI: 10.1111/nph.14860

Source DB:  PubMed          Journal:  New Phytol        ISSN: 0028-646X            Impact factor:   10.151


  10 in total

1.  Natural selection on a carbon cycling trait drives ecosystem engineering by Sphagnum (peat moss).

Authors:  Bryan T Piatkowski; Joseph B Yavitt; Merritt R Turetsky; A Jonathan Shaw
Journal:  Proc Biol Sci       Date:  2021-08-18       Impact factor: 5.530

2.  Sphagnum Species Modulate their Phenolic Profiles and Mycorrhizal Colonization of Surrounding Andromeda polifolia along Peatland Microhabitats.

Authors:  Geneviève Chiapusio; Vincent E J Jassey; Floriant Bellvert; Gilles Comte; Leslie A Weston; Frederic Delarue; Alexandre Buttler; Marie Laure Toussaint; Philippe Binet
Journal:  J Chem Ecol       Date:  2018-10-08       Impact factor: 2.626

3.  Expression of peat moss VASCULAR RELATED NAC-DOMAIN homologs in Nicotiana benthamiana leaf cells induces ectopic secondary wall formation.

Authors:  Shiori Terada; Minoru Kubo; Nobuhiro Akiyoshi; Ryosuke Sano; Toshihisa Nomura; Shinichiro Sawa; Misato Ohtani; Taku Demura
Journal:  Plant Mol Biol       Date:  2021-04-21       Impact factor: 4.076

4.  Development of an Image Analysis Pipeline to Estimate Sphagnum Colony Density in the Field.

Authors:  Willem Q M van de Koot; Larissa J J van Vliet; Weilun Chen; John H Doonan; Candida Nibau
Journal:  Plants (Basel)       Date:  2021-04-22

5.  Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing.

Authors:  Gareth Trubl; Ho Bin Jang; Simon Roux; Joanne B Emerson; Natalie Solonenko; Dean R Vik; Lindsey Solden; Jared Ellenbogen; Alexander T Runyon; Benjamin Bolduc; Ben J Woodcroft; Scott R Saleska; Gene W Tyson; Kelly C Wrighton; Matthew B Sullivan; Virginia I Rich
Journal:  mSystems       Date:  2018-10-02       Impact factor: 6.496

6.  Cross-kingdom signalling regulates spore germination in the moss Physcomitrella patens.

Authors:  Amy L Whitbread; Sarah Needs; Wesal Tanko; Kirsty Jones; Eleanor F Vesty; Nigel Halliday; Fatemeh Ghaderiardakani; Xiaoguang Liu; Miguel Cámara; Juliet C Coates
Journal:  Sci Rep       Date:  2020-02-13       Impact factor: 4.379

7.  Antimicrobial Activities of Secondary Metabolites from Model Mosses.

Authors:  Lia R Valeeva; Ashley L Dague; Mitchell H Hall; Anastasia E Tikhonova; Margarita R Sharipova; Monica A Valentovic; Lydia M Bogomolnaya; Eugene V Shakirov
Journal:  Antibiotics (Basel)       Date:  2022-07-26

8.  Habitat-adapted microbial communities mediate Sphagnum peatmoss resilience to warming.

Authors:  Alyssa A Carrell; Travis J Lawrence; Kristine Grace M Cabugao; Dana L Carper; Dale A Pelletier; Jun Hyung Lee; Sara S Jawdy; Jane Grimwood; Jeremy Schmutz; Paul J Hanson; A Jonathan Shaw; David J Weston
Journal:  New Phytol       Date:  2022-03-28       Impact factor: 10.323

Review 9.  Stress, senescence, and specialized metabolites in bryophytes.

Authors:  Samarth Kulshrestha; Rubina Jibran; John W van Klink; Yanfei Zhou; David A Brummell; Nick W Albert; Kathy E Schwinn; David Chagné; Marco Landi; John L Bowman; Kevin M Davies
Journal:  J Exp Bot       Date:  2022-07-16       Impact factor: 7.298

10.  Insight into early diversification of leucine-rich repeat receptor-like kinases provided by the sequenced moss and hornwort genomes.

Authors:  Chihiro Furumizu; Shinichiro Sawa
Journal:  Plant Mol Biol       Date:  2021-01-03       Impact factor: 4.076

  10 in total

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