Literature DB >> 29076067

Spirosoma flavus sp. nov., a novel bacterium from soil of Jeju Island.

Nabil Elderiny1, Seung-Yeol Lee1, Sangkyu Park1, In-Kyu Kang2, Myung Kyum Kim3, Dae Sung Lee4, Leonid N Ten1, Hee-Young Jung5,6.   

Abstract

A novel, Gram-staining negative, yellow pigmented bacterial strain, designated 15J11-2T, was isolated from soil sample on Jeju Island, Republic of Korea. The strain was subjected to a taxonomic study using a polyphasic approach. The strain was able to grow at temperature range from 10°C to 30°C, pH 7-8, and in presence of 0-1% (w/v) NaCl. Comparative 16S rRNA gene sequence analysis showed that strain 15J11-2T belongs to the genus Spirosoma and levels of 16S rRNA gene sequence similarity ranged from 91.5% to 89.8%. The genomic DNA G + C content of strain 15J11-2T was 46.0 mol%. The isolate contained phosphatidylethanolamine and an unidentified aminophospholipid as the main polar lipids, menaquinone MK-7 as the predominant respiratory quinone, and summed feature 3 (C16:1 ω6c/C16:1 ω7c; 39.4%), C16:1 ω5c (27.1%), and C16:0 (13.0%) as the major fatty acids, which supported the affiliation of strain 15J11-2T to the genus Spirosoma. The results of physiological and biochemical tests allowed genotypic and phenotypic differentiation of strain 15J11-2T from recognized Spirosoma species. On the basis of its phenotypic properties, genotypic distinctiveness, chemotaxonomic features, strain 15J11-2T represents a novel species of the genus Spirosoma, for which the name Spirosoma flavus sp. nov. is proposed. The type strain is 15J11-2T (= KCTC 52026T = JCM 31998T).

Entities:  

Keywords:  Bacteroidetes; Spirosoma; soil bacteria

Mesh:

Substances:

Year:  2017        PMID: 29076067     DOI: 10.1007/s12275-017-7360-0

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  27 in total

1.  16S ribosomal DNA amplification for phylogenetic study.

Authors:  W G Weisburg; S M Barns; D A Pelletier; D J Lane
Journal:  J Bacteriol       Date:  1991-01       Impact factor: 3.490

2.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

3.  List of novel names and novel combinations previously effectively, but not validly, published.

Authors:  Aharon Oren; George M Garrity
Journal:  Int J Syst Evol Microbiol       Date:  2017-07       Impact factor: 2.747

4.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

5.  Spirosoma soli sp. nov., isolated from biological soil crusts.

Authors:  Shan Shan Yang; Kai Tang; Xiaojie Zhang; Jianxia Wang; Xiaobing Wang; Fuying Feng; Heng Li
Journal:  Int J Syst Evol Microbiol       Date:  2016-10-09       Impact factor: 2.747

6.  Spirosoma swuense sp. nov., isolated from wet soil.

Authors:  Eun Sun Joo; Eun Bit Kim; Seon Hwa Jeon; Sathiyaraj Srinivasan; Myung Kyum Kim
Journal:  Int J Syst Evol Microbiol       Date:  2017-04-03       Impact factor: 2.747

7.  Spirosoma rigui sp. nov., isolated from fresh water.

Authors:  Keun Sik Baik; Mi Sun Kim; Seong Chan Park; Dong Wan Lee; Soon Dong Lee; Jong-Ok Ka; Sang Ki Choi; Chi Nam Seong
Journal:  Int J Syst Evol Microbiol       Date:  2007-12       Impact factor: 2.747

8.  Spirosoma lacussanchae sp. nov., a phosphate-solubilizing bacterium isolated from a freshwater reservoir.

Authors:  Yong Li; Meng-Jie Ai; Ye Sun; Yu-Qin Zhang; Jian-Qiang Zhang
Journal:  Int J Syst Evol Microbiol       Date:  2017-08-25       Impact factor: 2.747

9.  Spirosoma fluviale sp. nov., isolated from river water.

Authors:  Kouta Hatayama; Teruaki Kuno
Journal:  Int J Syst Evol Microbiol       Date:  2015-07-09       Impact factor: 2.747

10.  Spirosoma aerolatum sp. nov., isolated from a motor car air conditioning system.

Authors:  Dong-Uk Kim; Hyosun Lee; Song-Gun Kim; Jae-Hyung Ahn; So Yoon Park; Jong-Ok Ka
Journal:  Int J Syst Evol Microbiol       Date:  2015-11       Impact factor: 2.747

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