Literature DB >> 29074944

Enhancers looping to target genes.

Gosia Trynka1.   

Abstract

High-resolution maps of enhancer-promoter interactions in rare primary human T cell subsets and coronary artery smooth muscle cells link variants associated with autoimmune and cardiovascular diseases to target genes. This represents an important step forward for mapping genes involved in complex diseases.

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Year:  2017        PMID： 29074944     DOI： 10.1038/ng.3982

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


  7 in total

1.  Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements.

Authors:  Maxwell R Mumbach; Ansuman T Satpathy; Evan A Boyle; Chao Dai; Benjamin G Gowen; Seung Woo Cho; Michelle L Nguyen; Adam J Rubin; Jeffrey M Granja; Katelynn R Kazane; Yuning Wei; Trieu Nguyen; Peyton G Greenside; M Ryan Corces; Josh Tycko; Dimitre R Simeonov; Nabeela Suliman; Rui Li; Jin Xu; Ryan A Flynn; Anshul Kundaje; Paul A Khavari; Alexander Marson; Jacob E Corn; Thomas Quertermous; William J Greenleaf; Howard Y Chang
Journal:  Nat Genet       Date:  2017-09-25       Impact factor: 38.330

2.  HiChIP: efficient and sensitive analysis of protein-directed genome architecture.

Authors:  Maxwell R Mumbach; Adam J Rubin; Ryan A Flynn; Chao Dai; Paul A Khavari; William J Greenleaf; Howard Y Chang
Journal:  Nat Methods       Date:  2016-09-19       Impact factor: 28.547

3.  Chromatin marks identify critical cell types for fine mapping complex trait variants.

Authors:  Gosia Trynka; Cynthia Sandor; Buhm Han; Han Xu; Barbara E Stranger; X Shirley Liu; Soumya Raychaudhuri
Journal:  Nat Genet       Date:  2012-12-23       Impact factor: 38.330

Review 4.  Three-dimensional genome architecture: players and mechanisms.

Authors:  Ana Pombo; Niall Dillon
Journal:  Nat Rev Mol Cell Biol       Date:  2015-03-11       Impact factor: 94.444

5.  The NHGRI GWAS Catalog, a curated resource of SNP-trait associations.

Authors:  Danielle Welter; Jacqueline MacArthur; Joannella Morales; Tony Burdett; Peggy Hall; Heather Junkins; Alan Klemm; Paul Flicek; Teri Manolio; Lucia Hindorff; Helen Parkinson
Journal:  Nucleic Acids Res       Date:  2013-12-06       Impact factor: 16.971

6.  Genetic and epigenetic fine mapping of causal autoimmune disease variants.

Authors:  Kyle Kai-How Farh; Alexander Marson; Jiang Zhu; Markus Kleinewietfeld; William J Housley; Samantha Beik; Noam Shoresh; Holly Whitton; Russell J H Ryan; Alexander A Shishkin; Meital Hatan; Marlene J Carrasco-Alfonso; Dita Mayer; C John Luckey; Nikolaos A Patsopoulos; Philip L De Jager; Vijay K Kuchroo; Charles B Epstein; Mark J Daly; David A Hafler; Bradley E Bernstein
Journal:  Nature       Date:  2014-10-29       Impact factor: 49.962

Review 7.  Immunogenomic approaches to understand the function of immune disease variants.

Authors:  Dafni A Glinos; Blagoje Soskic; Gosia Trynka
Journal:  Immunology       Date:  2017-08-10       Impact factor: 7.397
  7 in total
  1 in total

1.  EMSY expression affects multiple components of the skin barrier with relevance to atopic dermatitis.

Authors:  Martina S Elias; Sheila C Wright; Judit Remenyi; James C Abbott; Susan E Bray; Christian Cole; Sharon Edwards; Marek Gierlinski; Mateusz Glok; John A McGrath; William V Nicholson; Lavinia Paternoster; Alan R Prescott; Sara Ten Have; Phillip D Whitfield; Angus I Lamond; Sara J Brown
Journal:  J Allergy Clin Immunol       Date:  2019-05-31       Impact factor: 10.793
  1 in total

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