Literature DB >> 29073088

Simulations predict microbial responses in the environment? This environment disagrees retrospectively.

Tom O Delmont1, A Murat Eren1,2.   

Abstract

Mesh：

Year:  2017        PMID： 29073088      PMCID： PMC5664545          DOI： 10.1073/pnas.1712186114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  9 in total

1.  Fast algorithms for large-scale genome alignment and comparison.

Authors:  Arthur L Delcher; Adam Phillippy; Jane Carlton; Steven L Salzberg
Journal:  Nucleic Acids Res       Date:  2002-06-01       Impact factor: 16.971

2.  Chemical dispersants can suppress the activity of natural oil-degrading microorganisms.

Authors:  Sara Kleindienst; Michael Seidel; Kai Ziervogel; Sharon Grim; Kathy Loftis; Sarah Harrison; Sairah Y Malkin; Matthew J Perkins; Jennifer Field; Mitchell L Sogin; Thorsten Dittmar; Uta Passow; Patricia M Medeiros; Samantha B Joye
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-09       Impact factor: 11.205

3.  Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders.

Authors:  Ping Hu; Eric A Dubinsky; Alexander J Probst; Jian Wang; Christian M K Sieber; Lauren M Tom; Piero R Gardinali; Jillian F Banfield; Ronald M Atlas; Gary L Andersen
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-26       Impact factor: 11.205

4.  Deep-sea oil plume enriches indigenous oil-degrading bacteria.

Authors:  Terry C Hazen; Eric A Dubinsky; Todd Z DeSantis; Gary L Andersen; Yvette M Piceno; Navjeet Singh; Janet K Jansson; Alexander Probst; Sharon E Borglin; Julian L Fortney; William T Stringfellow; Markus Bill; Mark E Conrad; Lauren M Tom; Krystle L Chavarria; Thana R Alusi; Regina Lamendella; Dominique C Joyner; Chelsea Spier; Jacob Baelum; Manfred Auer; Marcin L Zemla; Romy Chakraborty; Eric L Sonnenthal; Patrik D'haeseleer; Hoi-Ying N Holman; Shariff Osman; Zhenmei Lu; Joy D Van Nostrand; Ye Deng; Jizhong Zhou; Olivia U Mason
Journal:  Science       Date:  2010-08-24       Impact factor: 47.728

5.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

6.  Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico.

Authors:  Eric A Dubinsky; Mark E Conrad; Romy Chakraborty; Markus Bill; Sharon E Borglin; James T Hollibaugh; Olivia U Mason; Yvette M Piceno; Francine C Reid; William T Stringfellow; Lauren M Tom; Terry C Hazen; Gary L Andersen
Journal:  Environ Sci Technol       Date:  2013-09-19       Impact factor: 9.028

7.  Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill.

Authors:  Olivia U Mason; Terry C Hazen; Sharon Borglin; Patrick S G Chain; Eric A Dubinsky; Julian L Fortney; James Han; Hoi-Ying N Holman; Jenni Hultman; Regina Lamendella; Rachel Mackelprang; Stephanie Malfatti; Lauren M Tom; Susannah G Tringe; Tanja Woyke; Jizhong Zhou; Edward M Rubin; Janet K Jansson
Journal:  ISME J       Date:  2012-06-21       Impact factor: 10.302

8.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

Authors:  Donovan H Parks; Michael Imelfort; Connor T Skennerton; Philip Hugenholtz; Gene W Tyson
Journal:  Genome Res       Date:  2015-05-14       Impact factor: 9.043

9.  Anvi'o: an advanced analysis and visualization platform for 'omics data.

Authors:  A Murat Eren; Özcan C Esen; Christopher Quince; Joseph H Vineis; Hilary G Morrison; Mitchell L Sogin; Tom O Delmont
Journal:  PeerJ       Date:  2015-10-08       Impact factor: 2.984
  9 in total
  2 in total

1.  Reply to Delmont and Eren: Strain variants and population structure during the Deepwater Horizon oil spill.

Authors:  Alexander J Probst; Ping Hu; Christine L Sun; Eric A Dubinsky; Christian M K Sieber; Jillian F Banfield; Gary L Andersen
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-10       Impact factor: 11.205

2.  Proliferation of hydrocarbon-degrading microbes at the bottom of the Mariana Trench.

Authors:  Jiwen Liu; Yanfen Zheng; Heyu Lin; Xuchen Wang; Meng Li; Yang Liu; Meng Yu; Meixun Zhao; Nikolai Pedentchouk; David J Lea-Smith; Jonathan D Todd; Clayton R Magill; Wei-Jia Zhang; Shun Zhou; Delei Song; Haohui Zhong; Yu Xin; Min Yu; Jiwei Tian; Xiao-Hua Zhang
Journal:  Microbiome       Date:  2019-04-12       Impact factor: 14.650
  2 in total

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