Literature DB >> 29071673

High-Dimensional Modeling for Cytometry: Building Rock Solid Models Using GemStone™ and Verity Cen-se'™ High-Definition t-SNE Mapping.

C Bruce Bagwell1.   

Abstract

This chapter outlines how to approach the complex tasks associated with designing models for high-dimensional cytometry data. Unlike gating approaches, modeling lends itself to automation and accounts for measurement overlap among cellular populations. Designing these models is now easier because of a new technique called high-definition t-SNE mapping. Nontrivial examples are provided that serve as a guide to create models that are consistent with data.

Keywords:  Cen-se’ mapping; High-dimensional modeling; Probability state model; t-SNE

Mesh:

Year:  2018        PMID: 29071673     DOI: 10.1007/978-1-4939-7346-0_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  2 in total

1.  Loss-of-function of the hippo transducer TAZ reduces mammary tumor growth through a myeloid-derived suppressor cell-dependent mechanism.

Authors:  He Shen; Yuwen Zhang; Elliot D Kramer; Eriko Katsuta; Yin Wan; Yanmin Chen; Jianmin Wang; Yali Zhang; Junko Matsuzaki; Costa Frangou; Scott I Abrams; Jianmin Zhang
Journal:  Cancer Gene Ther       Date:  2022-07-15       Impact factor: 5.854

2.  Multi-site reproducibility of a human immunophenotyping assay in whole blood and peripheral blood mononuclear cells preparations using CyTOF technology coupled with Maxpar Pathsetter, an automated data analysis system.

Authors:  Charles Bruce Bagwell; Benjamin Hunsberger; Beth Hill; Donald Herbert; Christopher Bray; Thirumahal Selvanantham; Stephen Li; Jose C Villasboas; Kevin Pavelko; Michael Strausbauch; Adeeb Rahman; Gregory Kelly; Shahab Asgharzadeh; Azucena Gomez-Cabrero; Gregory Behbehani; Hsiaochi Chang; Justin Lyberger; Ruth Montgomery; Yujiao Zhao; Margaret Inokuma; Ofir Goldberger; Greg Stelzer
Journal:  Cytometry B Clin Cytom       Date:  2019-11-23       Impact factor: 3.058

  2 in total

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