| Literature DB >> 29065852 |
Erik Hallengren1,2, Peter Almgren3, Malin Svensson3, Widet Gallo3, Gunnar Engström3, Margaretha Persson3,4, Olle Melander3,4.
Abstract
BACKGROUND: Higher fasting Growth Hormone (GH) has been associated with increased cardiovascular morbidity and mortality. Our objective was to find genetic determinants of fasting GH in order to facilitate future efforts of analyzing the association between fasting growth hormone and cardiovascular disease. A genome-wide association study (GWAS) was performed in a discovery cohort of 4134 persons (58% females; age 46-68 yrs), linking SNPs to fasting hs-GH. Fifteen SNPs were replicated in an independent cohort of 5262 persons (28.9% females; age 56-85 yrs). The best performing SNP was analyzed vs GH-related variables in a third independent cohort (n = 24,047; 61% females; age 44-73 yrs). A candidate gene approach searched for significant SNPs in the genes GH1 and GHR in the discovery cohort and was replicated as previously described.Entities:
Keywords: Coronary artery disease; GWAS; Growth hormone; Height; SNP
Mesh:
Substances:
Year: 2017 PMID: 29065852 PMCID: PMC5655832 DOI: 10.1186/s12864-017-4219-z
Source DB: PubMed Journal: BMC Genomics ISSN: 1471-2164 Impact factor: 3.969
Fig. 1Overview of planned methodology in the GWAS and candidate gene approaches
Baseline characteristics of eligible participants in the different cohorts
| MDC-CC - Discovery | MPP - Replication | MDC - Anthropometry | |
|---|---|---|---|
| Number of participants | 4134 | 5262 | 24,047 |
| Female (%) | 2405 (58.2) | 1522 (28.9)*** | 14,588 (60.7)** |
| Age, mean (SD), years | 57.7 (6.0) | 69.3 (6.3)*** | 58.1 (7.9)** |
| Body Mass Index, mean (SD), kg/m2 | 25.8 (3.9) | 27.2 (4.2)*** | 25.8 (4.1) |
| Waist, mean (SD), cm | 83.8 (12.9) | 95.8 (12.2)*** | 84.5 (13.1)** |
| Waist-hip-ratio (SD) | 0.85 (0.09) | 0.93 (0.09)*** | 0.85 (0.09) |
| Bodyfat percentage, mean (SD), % | 27.6 (7.1) | N/A | 26.8 (7.0)*** |
| Height, mean (SD), cm | 169 (9) | 171 (9)*** | 169 (9) |
| Diabetes Mellitus (%) | 367 (8.9) | 615 (11.7)*** | 1043 (4.3)*** |
| Smoking (%) | 1081 (26.1) | 1028 (19.5)*** | 6338 (26.4) |
| Lipid-lowering therapy (%) | 89 (2.2) | 1060 (20.1)*** | 762 (3.2)*** |
| Growth Hormone - males, median (IQR), μg/L | 0.11 (0.06–0.33) | 0.40 (0.11–1.27)*** | N/A |
| Growth Hormone - females, median (IQR), μg/L | 1.21 (0.38–3.12) | 0.49 (0.14–1.62)*** | N/A |
*p < 0.05 for difference compared with MDC-CC. **p < 0.01 for difference compared with MDC-CC. ***p < 0.001 for difference compared with MDC-CC
Fifteen selected SNPs in relation to hs-GH in GWAS-approach in MDC-CC
| SNP | Chr | Basepaira | Major allele | Minor allele | MAF | Geneb | β | 95%CI | P |
|---|---|---|---|---|---|---|---|---|---|
| rs7920826 | 10 | 122,808,053 | T | G | 0.16 | – | −0.19 | −0.27 to −0.11 | 4.2a10^-6 |
| rs9816337 | 3 | 28,936,109 | G | T | 0.46 | – | −0.14 | −0.20 to −0.08 | 4.3a10^-6 |
| rs7208736 | 17 | 1,807,705 | G | A | 0.36 | – | −0.14 | −0.21 to −0.08 | 5.2a10^-6 |
| rs6552287 | 4 | 179,194,375 | T | C | 0.42 | – | −0.14 | −0.20 to −0.08 | 5.2a10^-6 |
| rs10513091 | 5 | 11,423,525 | T | C | 0.15 | CTNND2 | 0.19 | 0.11 to 0.27 | 6.5a10^-6 |
| rs11644234 | 16 | 53,036,844 | C | T | 0.11 | – | −0.21 | −0.30 to −0.11 | 1.1a10^-5 |
| rs3803071 | 12 | 94,698,880 | T | C | 0.45 | PLXNC1 | −0.13 | −0.19 to −0.07 | 1.3a10^-5 |
| rs10472071 | 5 | 58,031,027 | A | G | 0.09 | RAB3C | 0.22 | 0.11 to 0.32 | 5.3a10^-5 |
| rs17094404 | 8 | 13,370,143 | T | C | 0.03 | DLC1 | 0.26 | 0.09 to 0.42 | 0.003 |
| rs7987689 | 13 | 43,928,135 | C | T | 0.34 | ENOX1 | −0.09 | −0.15 to −0.03 | 0.005 |
| rs4839595 | 3 | 143,163,169 | G | A | 0.45 | SLC9A9 | 0.08 | 0.02 to 0.14 | 0.008 |
| rs6767160 | 3 | 71,741,068 | T | C | 0.06 | EIF4E3 | 0.15 | 0.02 to 0.28 | 0.018 |
| rs687543 | 5 | 81,220,187 | C | T | 0.10 | – | −0.12 | −0.21 to −0.02 | 0.019 |
| rs2361028 | 1 | 119,410,215 | G | T | 0.45 | – | 0.04 | −0.02 to 0.10 | 0.14 |
| rs16961034 | 16 | 59,419,461 | T | C | 0.01 | – | 0.30 | 0.03 to 0.57 | 0.030 |
Minor allele modeled as effect allele.The β coefficients are expressed as the increment of standardized values of the natural logarithm of hs-GH per 1 minor allele. Adjusted for age and sex
Abbreviations: chr Chromosome number, MAF Minor allele frequency, Gene Annotated gene. No available for analysis in: all: 4123–4134
abasepair positions refer to GRCh37
bGene annotation
Linear regression models of the effect of the two selected SNPs on GH-related variables in MDC
| rs7208736 (GWAS) | rs13153388 (Candidate gene) | ||||||
|---|---|---|---|---|---|---|---|
| Variable | Beta | 95%CI | P | Beta | 95%CI | P | |
| All | Height | −0.002 | −0.015 to 0.011 | 0.78 | −0.019 | −0.032 to −0.006 |
|
| BMI | −0.005 | −0.024 to 0.014 | 0.59 | 0.009 | −0.010 to 0.027 | 0.36 | |
| Waist | −0.004 | −0.019 to 0.012 | 0.64 | 0.010 | −0.005 to 0.025 | 0.18 | |
| Male | Height | −0.006 | −0.036 to 0.024 | 0.70 | −0.017 | −0.046 to 0.012 | 0.26 |
| BMI | −0.035 | −0.065 to −0.004 |
| 0.010 | −0.020 to 0.039 | 0.51 | |
| Waist | −0.036 | −0.066 to −0.005 |
| 0.008 | −0.021 to 0.038 | 0.58 | |
| Female | Height | 0.000 | −0.024 to 0.024 | 0.99 | −0.034 | −0.057 to −0.011 |
|
| BMI | 0.009 | −0.015 to 0.033 | 0.46 | 0.008 | −0.015 to 0.032 | 0.48 | |
| Waist | 0.013 | −0.011 to 0.037 | 0.28 | 0.015 | −0.008 to 0.039 | 0.19 | |
Minor allele modeled as effect allele.One linear regression model is executed per variable with the variable in question as independent. Adjusted for sex and age. Beta coefficients are expressed as the increment of standardized values of the variable (BMI, waist, height) per 1 minor allele. Individuals available for analysis in rs7208736 ranging between 23,126–23,140 in all; 9103–9109 in males and 14,023–14,031 in females. Individuals available for analysis in rs13153388 ranging between 22,997–23,011 in all; 9024–9031 in males and 13,973–13,980 in females. p-values < 0.05 in bold
Nominally significant SNPs in GHR-gene in MDC-CC
| SNP | Basepaira | Major allele | Minor allele | MAF | Beta | 95%CI | P |
|---|---|---|---|---|---|---|---|
| rs13188386 | 42,473,555 | G | A | 0.26 | 0.085 | 0.018 to 0.151 | 0.01 |
| rs13153388 | 42,507,333 | T | G | 0.44 | 0.088 | 0.029 to 0.147 | 0.003 |
| rs4365846 | 42,547,255 | A | G | 0.24 | 0.087 | 0.018 to 0.156 | 0.01 |
| rs6883523 | 42,564,748 | G | T | 0.18 | 0.079 | 0.003 to 0.155 | 0.04 |
Minor allele modeled as effect allele.The β coefficients are expressed as the increment of standardized values of the natural logarithm of hs-GH per 1 minor allele. Adjusted for age and sex
Abbreviations: MAF Minor allele frequency.Number of individuals available for analysis: 4126–4131
aBasepair number for polymorphism (GRCh37). All the SNPs are located in the GHR-gene on chromosome 5
Fig. 2Height of the participants in the MDC study stratified on number of minor allele (G) copies in the SNP rs13153388, which is located in the GHR-gene. Number of individuals in analysis, males: TT, 2970; GT, 4432; GG, 1647. Females: TT, 4667; GT, 6807; GG, 2529