| Literature DB >> 29063500 |
Kayla M Sheets1, Michael L Baird2, Julie Heinig2, Debra Davis2, Mary Sabatini3, D Barry Starr4.
Abstract
In the fertility clinic setting, a negative DNA paternity test result usually suggests a sample mix-up likely occurred at the testing company or in the clinic. However, we report a case where, despite repeat negative paternity test results, the alleged father (referred to as "the proband") was confirmed to be the baby's father. The proband, a 34 year-old male, contacted our research group when routine blood testing revealed discrepant blood types between the parents and the baby, repeat paternity tests were negative (excluding the proband as the baby's father), and the fertility clinic found no evidence of any wrongdoing. Microarray technology was utilized to confirm biological relatedness, which revealed an avuncular (uncle/nephew) relationship. Additional tissue samples were analyzed and family studies were conducted at paternity and forensic laboratories using STR-based DNA tests to elucidate the proband's condition of congenital tetragametic chimerism. His paternity was subsequently affirmed and the fertility clinic exonerated of claims of a semen sample mix-up. This case underscores the possibility that some allegations of fertility clinic missteps may be explained by undiagnosed chimerism, a condition where an individual harbors two distinct genomes. We offer specific suggestions for improving laboratory reporting and creating clinical guidelines to aid in identifying and rectifying future cases of false exclusions of paternity due to chimerism.Entities:
Keywords: Assisted reproductive technology; Congenital chimera; False negative DNA paternity testing; Gamete mix-up; Semen sample mix-up; Tetragametic chimerism
Mesh:
Year: 2017 PMID: 29063500 PMCID: PMC5845036 DOI: 10.1007/s10815-017-1064-6
Source DB: PubMed Journal: J Assist Reprod Genet ISSN: 1058-0468 Impact factor: 3.412
Fig. 1At-home DNA relationship testing result. Ancestry test result depicts chromosomes, shown by gray bars, and ordered according to autosomal number. The green regions represent segments of contiguous SNPs that are shared between the proband and child. In a typical parent/child relationship, the green regions would have longer contiguous green lines across the length of chromosomal segments, rather than short green lines that represent the ~ 25% of shared DNA, as is seen in this uncle/nephew biological relationship
Proband’s familial studies. The proband’s immediate family members provided buccal samples for STR-based DNA testing at DDC’s relationship testing laboratory. The major genome is defined as the chimera’s predominant genome, while the minor genome is defined as the less predominant genome, which presumably originated from the DZ twin. The first son’s DNA testing revealed the presence of the proband’s major genome. Meanwhile proband’s second son’s DNA showed the presence of the minor genome and correlated to the proband’s semen-derived DNA sample
| Relatives | Tissue type | DNA test method | Result |
|---|---|---|---|
| Wife | Buccal | 15 STR | All alleles accounted for in sons |
| 1st son | Buccal | 15 STR | Major genome |
| 2nd son | Buccal | 15 STR | Minor genome |
| Proband’s father | Buccal | 15 STR | All alleles accounted for in major and minor genome of proband |
| Proband’s mother | Buccal | 15 STR | All alleles accounted for in major and minor genome of proband |
Comparing methodologies: testing outcomes of Proband’s Buccal DNA. The proband’s buccal-derived DNA sample was analyzed with three different molecular genetic testing platforms. Each methodology yielded varying conclusions. Standard STR-based analysis in paternity laboratories excluded the proband from being the child’s father, providing no indication of a more distant blood relationship. The forensic laboratory utilized a more sensitive protocol, and only detected the proband’s major genome. The SNP-based array used by the ancestry testing laboratory identified a second-degree (avuncular) relationship between the proband and child
| Paternity testing (15 STRs) | Forensic testing (15 STRs) | Ancestry testing (SNPs) |
|---|---|---|
| Exclusion | Major genome detected | Second-degree relationship |
Forensic DNA testing of proband’s semen confirms paternity of the second son DDC DNA test report. The proband’s semen contains two cell lines with multiple alleles present at each locus. The combined paternity index (CPI) of 134,323 was calculated using minor alleles
| Mother (buccal) | Child (buccal) | Alleged father (semen) | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Locus | PI | Allele sizes | Allele sizes | Allele sizes | |||||
| D3S1358 | 1.88 | 15 | 16 | 15 | 15 | 18 | |||
| vWA | 1.21 | 18 | 19 | 17 | 19 | 16 | 17 | 19 | |
| D16S539 | 1.41 | 12 | 13 | 12 | 13 | 11 | 12 | 13 | |
| CSF1PO | 1.10 | 11 | 12 | 11 | 10 | 11 | 12 | ||
| TPOX | 0.62 | 8 | 9 | 8 | 8 | 9 | 11 | ||
| D8S1179 | 3.36 | 10 | 14 | 10 | 15 | 11 | 13 | 15 | |
| D21S11 | 10.79 | 29 | 33.2 | 27 | 33.2 | 27 | 29 | 33.2 | |
| D18S51 | 5.88 | 15 | 17 | 15 | 19 | 15 | 16 | 19 | 22 |
| D19S433 | 1.70 | 13 | 14 | 13 | 14 | 13 | 14 | ||
| TH01 | 1.64 | 6 | 8 | 6 | 9.3 | 6 | 9.3 | ||
| FGA | 2.36 | 20 | 24 | 20 | 24 | 20 | 23 | 24 | |
| D5S818 | 1.37 | 11 | 12 | 11 | 12 | 11 | 12 | ||
| D13S317 | 4.47 | 8 | 12 | 8 | 13 | 12 | 13 | ||
| D7S820 | 2.41 | 9 | 10 | 9 | 11 | 9 | 11 | ||
| D2S1338 | 2.98 | 19 | 19 | 17 | 19 | 22 | |||
| Amelogenin | X | X | Y | X | Y | ||||
| Interpretation: | |||||||||
| Combined paternity index: | 134,323 | Probability of paternity: 99.9993% | |||||||
| The alleged father is not excluded as the biological father of the tested child. Based on testing results obtained from analyses of the DNA loci listed, the probability of paternity is 99.9993%. This probability of paternity is calculated by comparing an untested, unrelated, random individual of the Caucasian population (assumes prior probability equals 0.50). | |||||||||
Fig. 2Proband’s pedigree. Tetragametic chimerism gives rise to complex family pedigrees. The proband (II.1) was predicted to have originated as a dizygotic twin pregnancy. Cells from his unborn twin (II.3) were incorporated into his gametes, giving rise to sperm of two distinct cell lines. As a result, the proband’s second son (III.2) was conceived via sperm that contained the minor genome, originally from the vanished twin, II.3
Physical traits associated with chimerism. Most individuals with chimerism do not manifest physical traits indicative of their condition, and as a result, are believed to remain undiagnosed. Previous cases have described one or more physical traits listed above, which are associated with the phenotype of blood-exclusive or tetragametic chimerism
| Physical trait | Type of chimerism |
|---|---|
| Discordant blood types | Blood-exclusive or tetragametic |
| Patchy, different colored hair | Tetragametic |
| Different colored eyes | Tetragametic |
| Bicolored skin pigmentation (depicting lines of Blaschko) | Tetragametic |
| Disorders of sexual development | Tetragametic |