Literature DB >> 29062071

Anti-CRISPR: discovery, mechanism and function.

April Pawluk1, Alan R Davidson2, Karen L Maxwell1.   

Abstract

CRISPR-Cas adaptive immune systems are widespread among bacteria and archaea. Recent studies have shown that these systems have minimal long-term evolutionary effects in limiting horizontal gene transfer. This suggests that the ability to evade CRISPR-Cas immunity must also be widespread in phages and other mobile genetic elements. In this Progress article, we discuss recent discoveries that highlight how phages inactivate CRISPR-Cas systems by using anti-CRISPR proteins, and we outline evolutionary and biotechnological implications of their activity.

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Year:  2017        PMID: 29062071     DOI: 10.1038/nrmicro.2017.120

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  53 in total

Review 1.  Genomic islands in pathogenic and environmental microorganisms.

Authors:  Ulrich Dobrindt; Bianca Hochhut; Ute Hentschel; Jörg Hacker
Journal:  Nat Rev Microbiol       Date:  2004-05       Impact factor: 60.633

2.  Parasite Exposure Drives Selective Evolution of Constitutive versus Inducible Defense.

Authors:  Edze R Westra; Stineke van Houte; Sam Oyesiku-Blakemore; Ben Makin; Jenny M Broniewski; Alex Best; Joseph Bondy-Denomy; Alan Davidson; Mike Boots; Angus Buckling
Journal:  Curr Biol       Date:  2015-03-12       Impact factor: 10.834

3.  Alternate binding modes of anti-CRISPR viral suppressors AcrF1/2 to Csy surveillance complex revealed by cryo-EM structures.

Authors:  Ruchao Peng; Ying Xu; Tengfei Zhu; Ningning Li; Jianxun Qi; Yan Chai; Min Wu; Xinzheng Zhang; Yi Shi; Peiyi Wang; Jiawei Wang; Ning Gao; George Fu Gao
Journal:  Cell Res       Date:  2017-06-02       Impact factor: 25.617

Review 4.  The mom gene of bacteriophage Mu.

Authors:  R Kahmann
Journal:  Curr Top Microbiol Immunol       Date:  1984       Impact factor: 4.291

5.  CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA.

Authors:  Luciano A Marraffini; Erik J Sontheimer
Journal:  Science       Date:  2008-12-19       Impact factor: 47.728

Review 6.  An updated evolutionary classification of CRISPR-Cas systems.

Authors:  Kira S Makarova; Yuri I Wolf; Omer S Alkhnbashi; Fabrizio Costa; Shiraz A Shah; Sita J Saunders; Rodolphe Barrangou; Stan J J Brouns; Emmanuelle Charpentier; Daniel H Haft; Philippe Horvath; Sylvain Moineau; Francisco J M Mojica; Rebecca M Terns; Michael P Terns; Malcolm F White; Alexander F Yakunin; Roger A Garrett; John van der Oost; Rolf Backofen; Eugene V Koonin
Journal:  Nat Rev Microbiol       Date:  2015-09-28       Impact factor: 60.633

7.  A Broad-Spectrum Inhibitor of CRISPR-Cas9.

Authors:  Lucas B Harrington; Kevin W Doxzen; Enbo Ma; Jun-Jie Liu; Gavin J Knott; Alireza Edraki; Bianca Garcia; Nadia Amrani; Janice S Chen; Joshua C Cofsky; Philip J Kranzusch; Erik J Sontheimer; Alan R Davidson; Karen L Maxwell; Jennifer A Doudna
Journal:  Cell       Date:  2017-08-24       Impact factor: 41.582

8.  Novel non-specific DNA adenine methyltransferases.

Authors:  Marek Drozdz; Andrzej Piekarowicz; Janusz M Bujnicki; Monika Radlinska
Journal:  Nucleic Acids Res       Date:  2011-11-18       Impact factor: 16.971

9.  Dealing with the evolutionary downside of CRISPR immunity: bacteria and beneficial plasmids.

Authors:  Wenyan Jiang; Inbal Maniv; Fawaz Arain; Yaying Wang; Bruce R Levin; Luciano A Marraffini
Journal:  PLoS Genet       Date:  2013-09-26       Impact factor: 5.917

Review 10.  Phages Fight Back: Inactivation of the CRISPR-Cas Bacterial Immune System by Anti-CRISPR Proteins.

Authors:  Karen L Maxwell
Journal:  PLoS Pathog       Date:  2016-01-07       Impact factor: 6.823

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  105 in total

1.  Biochemical characterization of RNA-guided ribonuclease activities for CRISPR-Cas9 systems.

Authors:  Max J Gramelspacher; Zhonggang Hou; Yan Zhang
Journal:  Methods       Date:  2019-06-20       Impact factor: 3.608

2.  Tolerance of Sulfolobus SMV1 virus to the immunity of I-A and III-B CRISPR-Cas systems in Sulfolobus islandicus.

Authors:  Tong Guo; Wenyuan Han; Qunxin She
Journal:  RNA Biol       Date:  2018-07-09       Impact factor: 4.652

3.  Structural insight into multistage inhibition of CRISPR-Cas12a by AcrVA4.

Authors:  Ruchao Peng; Zhiteng Li; Ying Xu; Shaoshuai He; Qi Peng; Lian-Ao Wu; Ying Wu; Jianxun Qi; Peiyi Wang; Yi Shi; George F Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-29       Impact factor: 11.205

4.  Genome-wide correlation analysis suggests different roles of CRISPR-Cas systems in the acquisition of antibiotic resistance genes in diverse species.

Authors:  Saadlee Shehreen; Te-Yuan Chyou; Peter C Fineran; Chris M Brown
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-05-13       Impact factor: 6.237

Review 5.  Structure-based functional mechanisms and biotechnology applications of anti-CRISPR proteins.

Authors:  Ning Jia; Dinshaw J Patel
Journal:  Nat Rev Mol Cell Biol       Date:  2021-06-04       Impact factor: 94.444

6.  Bacteriophage Cooperation Suppresses CRISPR-Cas3 and Cas9 Immunity.

Authors:  Adair L Borges; Jenny Y Zhang; MaryClare F Rollins; Beatriz A Osuna; Blake Wiedenheft; Joseph Bondy-Denomy
Journal:  Cell       Date:  2018-07-19       Impact factor: 41.582

Review 7.  Precision Control of CRISPR-Cas9 Using Small Molecules and Light.

Authors:  Soumyashree A Gangopadhyay; Kurt J Cox; Debasish Manna; Donghyun Lim; Basudeb Maji; Qingxuan Zhou; Amit Choudhary
Journal:  Biochemistry       Date:  2019-01-22       Impact factor: 3.162

8.  Machine learning predicts new anti-CRISPR proteins.

Authors:  Simon Eitzinger; Amina Asif; Kyle E Watters; Anthony T Iavarone; Gavin J Knott; Jennifer A Doudna; Fayyaz Ul Amir Afsar Minhas
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

9.  Quantification of the affinities of CRISPR-Cas9 nucleases for cognate protospacer adjacent motif (PAM) sequences.

Authors:  Vladimir Mekler; Konstantin Kuznedelov; Konstantin Severinov
Journal:  J Biol Chem       Date:  2020-04-01       Impact factor: 5.157

10.  Covalent Modifications of the Bacteriophage Genome Confer a Degree of Resistance to Bacterial CRISPR Systems.

Authors:  Yuepeng Liu; Li Dai; Junhua Dong; Cen Chen; Jingen Zhu; Venigalla B Rao; Pan Tao
Journal:  J Virol       Date:  2020-11-09       Impact factor: 5.103

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