Literature DB >> 29060620

DeepDeath: Learning to predict the underlying cause of death with Big Data.

Hamid Reza Hassanzadeh, May D Wang.   

Abstract

Multiple cause-of-death data provides a valuable source of information that can be used to enhance health standards by predicting health related trajectories in societies with large populations. These data are often available in large quantities across U.S. states and require Big Data techniques to uncover complex hidden patterns. We design two different classes of models suitable for large-scale analysis of mortality data, a Hadoop-based ensemble of random forests trained over N-grams, and the DeepDeath, a deep classifier based on the recurrent neural network (RNN). We apply both classes to the mortality data provided by the National Center for Health Statistics and show that while both perform significantly better than the random classifier, the deep model that utilizes long short-term memory networks (LSTMs), surpasses the N-gram based models and is capable of learning the temporal aspect of the data without a need for building ad-hoc, expert-driven features.

Entities:  

Mesh:

Year:  2017        PMID: 29060620      PMCID: PMC7324297          DOI: 10.1109/EMBC.2017.8037579

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  13 in total

1.  Effects of HIV infection on age and cause of death for persons with hemophilia A in the United States.

Authors:  T L Chorba; R C Holman; M J Clarke; B L Evatt
Journal:  Am J Hematol       Date:  2001-04       Impact factor: 10.047

2.  Trends in non-Hodgkin lymphoma (NHL) and HIV-associated NHL deaths in the United States.

Authors:  W C Hooper; R C Holman; M J Clarke; T L Chorba
Journal:  Am J Hematol       Date:  2001-03       Impact factor: 10.047

3.  Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning.

Authors:  Babak Alipanahi; Andrew Delong; Matthew T Weirauch; Brendan J Frey
Journal:  Nat Biotechnol       Date:  2015-07-27       Impact factor: 54.908

4.  Deep learning for regulatory genomics.

Authors:  Yongjin Park; Manolis Kellis
Journal:  Nat Biotechnol       Date:  2015-08       Impact factor: 54.908

5.  DeeperBind: Enhancing Prediction of Sequence Specificities of DNA Binding Proteins.

Authors:  Hamid Reza Hassanzadeh; May D Wang
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2017-01-19

6.  n-gram-based classification and unsupervised hierarchical clustering of genome sequences.

Authors:  Andrija Tomović; Predrag Janicić; Vlado Keselj
Journal:  Comput Methods Programs Biomed       Date:  2006-01-19       Impact factor: 5.428

7.  Long short-term memory.

Authors:  S Hochreiter; J Schmidhuber
Journal:  Neural Comput       Date:  1997-11-15       Impact factor: 2.026

Review 8.  Analytical potential for multiple cause-of-death data.

Authors:  R A Israel; H M Rosenberg; L R Curtin
Journal:  Am J Epidemiol       Date:  1986-08       Impact factor: 4.897

9.  N-gram support vector machines for scalable procedure and diagnosis classification, with applications to clinical free text data from the intensive care unit.

Authors:  Ben J Marafino; Jason M Davies; Naomi S Bardach; Mitzi L Dean; R Adams Dudley
Journal:  J Am Med Inform Assoc       Date:  2014-04-30       Impact factor: 4.497

Review 10.  Review of general algorithmic features for genome assemblers for next generation sequencers.

Authors:  Bilal Wajid; Erchin Serpedin
Journal:  Genomics Proteomics Bioinformatics       Date:  2012-06-09       Impact factor: 7.691

View more
  1 in total

1.  An Integrated Deep Network for Cancer Survival Prediction Using Omics Data.

Authors:  Hamid Reza Hassanzadeh; May D Wang
Journal:  Front Big Data       Date:  2021-07-16
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.