| Literature DB >> 29058616 |
D Duarte-Delgado1,2, D Juyó1, C Gebhardt3, F Sarmiento4, T Mosquera-Vásquez5.
Abstract
Entities:
Year: 2017 PMID: 29058616 PMCID: PMC5649525 DOI: 10.1186/s12863-017-0555-x
Source DB: PubMed Journal: BMC Genet ISSN: 1471-2156 Impact factor: 2.797
Loci (PGSC0003DMG*********) from the reference genome [28, 43] analyzed in 112 Solanum tuberosum Group Phureja accessions
| Gene Acronym | Locus | Chr. | Primer Sequences 5′-3’ | Ta (°C) | Amplicon | No. SNPs Scored |
|---|---|---|---|---|---|---|
| (GenBank Accesion No.) | size (bp) | (Scored previously)e | ||||
|
| PGSC0003DMG400007782 | III | *f-cagatatgttacatactctacc | 59 | 963 | 4 (0) |
|
| PGSC0003DMG400028382 | V | *f-ttacattgcacaagcacaagc | 57 | 982 | 14 (1) [67] |
|
| PGSC0003DMG402018552 | III | f-aacaataggaatttaccataacc | 57 | 970 | 12 (0) |
|
| PGSC0003DMG400008943 | IX | f-caattcttcgattcttcatagg | 57 | 798 | 9 (8) [39] |
|
| PGSC0003DMG400013856 | III | f-catacattacactatagatcc | 56 | 926 | 5 (2) [39,40] |
| f-caaaatgaatacatattaagaggb | 56 | 707 | 4 (0) | |||
| *r-cttaagcagttgcttagagc | ||||||
|
| PGSC0003DMG401013333 | XI | f-atgatgttctccacttaaaagc | 56 | 805 | 11 (1)[42] |
| *r-tttcagattttcagaagagagg | ||||||
| *f-tgattaacgatactatacgtcc | 56 | 931 | 12 (1) [42] | |||
| r-ttaaaacttccttatactatatgg | ||||||
|
| PGSC0003DMG400007677 | V | f-ttctgttatctacttagttacg | 56 | 992 | 5 (3) [7,41] |
| *r-gttttatatcttgcttctttgg | ||||||
|
| PGSC0003DMG400001855 | VIII | f-gctactggagcatggtgacagac | 57 | 560 | 9 (9) [5] |
| *r-ttacatagaggtctgtcctgcttgag | ||||||
|
| PGSC0003DMG400016613 | IX | *f-ggtctgatgatctatctgattgcc | 57 | 871 | 16 (16) [7,41] |
| r-cgacatcttgaggagaaccaaactt | ||||||
|
| PGSC0003DMG400007831 | XII | f-gcttcctggtcttggctcd | 60 | 985 | 8 (3) [37] |
| *r-gataggcatacgcagccaggtcagaaatcaa |
Chr, chromosome; Ta, annealing temperature
* Primer used for amplicon sequencing
a These parenthesis include the alternative acronyms used in the starch-sugar interconversion pathway scheme adapted by Schreiber et al. [7]
b From a region downstream of the Pain1 candidate gene
c From Schreiber et al. [7]
d From Fischer et al. [37]
e The studies where the SNPs or the related amino acid changes were previously reported in tetraploid potatoes are indicated