Literature DB >> 29058616

Correction to: Novel SNP markers in InvGE and SssI genes are associated with natural variation of sugar contents and frying color in Solanum tuberosum Group Phureja.

D Duarte-Delgado1,2, D Juyó1, C Gebhardt3, F Sarmiento4, T Mosquera-Vásquez5.   

Abstract

Entities:  

Year:  2017        PMID: 29058616      PMCID: PMC5649525          DOI: 10.1186/s12863-017-0555-x

Source DB:  PubMed          Journal:  BMC Genet        ISSN: 1471-2156            Impact factor:   2.797


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Correction

After the publication of this work [1], we detected some mistakes in the reverse primers of InvGE and BMY-8/2 and in the forward primer of PWD shown in Table 1. Additionally, we made some editions in the primer sequences from Additional files 2 and 3. Please see the corrected Table 1 and Additional files 2 and 3 below.
Table 1

Loci (PGSC0003DMG*********) from the reference genome [28, 43] analyzed in 112 Solanum tuberosum Group Phureja accessions

Gene AcronymLocusChr.Primer Sequences 5′-3’Ta (°C)AmpliconNo. SNPs Scored
(GenBank Accesion No.)size (bp)(Scored previously)e
Stp23 (PHO1)a (D00520)PGSC0003DMG400007782III*f-cagatatgttacatactctaccr-tcattagtcacaactttatcgg599634 (0)
StpL (PHO1)a (X73684)PGSC0003DMG400028382V*f-ttacattgcacaagcacaagcr-gtgtacatacaatactctatcc5798214 (1) [67]
SssI (Y10416)PGSC0003DMG402018552IIIf-aacaataggaatttaccataacc*r-atattcccaaacaaaacagagc5797012 (0)
InvGE (INV-cw)a (AJ133765)PGSC0003DMG400008943IXf-caattcttcgattcttcatagg*r-acagcacctatgtattataatgg577989 (8) [39]
Pain1 (INV)a (X70368)PGSC0003DMG400013856IIIf-catacattacactatagatcc*r-aattgaagcagatcatgtagg569265 (2) [39,40]
f-caaaatgaatacatattaagaggb 567074 (0)
*r-cttaagcagttgcttagagc
UGPase (D00667)PGSC0003DMG401013333XIf-atgatgttctccacttaaaagc5680511 (1)[42]
*r-tttcagattttcagaagagagg
*f-tgattaacgatactatacgtcc5693112 (1) [42]
r-ttaaaacttccttatactatatgg
GWD (Y09533)PGSC0003DMG400007677Vf-ttctgttatctacttagttacg569925 (3) [7,41]
*r-gttttatatcttgcttctttgg
BMY-8/2 (AF393847)PGSC0003DMG400001855VIIIf-gctactggagcatggtgacagac 575609 (9) [5]
*r-ttacatagaggtctgtcctgcttgag
PWD (AY747068)PGSC0003DMG400016613IX*f-ggtctgatgatctatctgattgcc 5787116 (16) [7,41]
r-cgacatcttgaggagaaccaaactt
LapN (X77015)PGSC0003DMG400007831XIIf-gcttcctggtcttggctcd 609858 (3) [37]
*r-gataggcatacgcagccaggtcagaaatcaa

Chr, chromosome; Ta, annealing temperature

* Primer used for amplicon sequencing

a These parenthesis include the alternative acronyms used in the starch-sugar interconversion pathway scheme adapted by Schreiber et al. [7]

b From a region downstream of the Pain1 candidate gene

c From Schreiber et al. [7]

d From Fischer et al. [37]

e The studies where the SNPs or the related amino acid changes were previously reported in tetraploid potatoes are indicated

Loci (PGSC0003DMG*********) from the reference genome [28, 43] analyzed in 112 Solanum tuberosum Group Phureja accessions Chr, chromosome; Ta, annealing temperature * Primer used for amplicon sequencing a These parenthesis include the alternative acronyms used in the starch-sugar interconversion pathway scheme adapted by Schreiber et al. [7] b From a region downstream of the Pain1 candidate gene c From Schreiber et al. [7] d From Fischer et al. [37] e The studies where the SNPs or the related amino acid changes were previously reported in tetraploid potatoes are indicated Amplicon sequences of candidate genes with associations to sugar contents and frying color in Solanum tuberosum Group Phureja with the SNP alleles and SNP positions in the potato reference genome (version 4.03) [28, 43]. The sequences were retrieved from the SPUD data base [44]. Primer sequences are underlined, markers with associations are highlighted in blue and SNPs previously reported for tetraploid potatoes are shown in italics. The numbers indicate the position of the sequence and the SNPs in the chromosomes (chr). Exonic regions are represented with red letters while introns are represented in black letters according to the gene models from the SPUD data base [44]. (DOCX 23 kb) Amplicon sequences of additional candidate genes studied in Solanum tuberosum Group Phureja with the SNP alleles and SNP positions in the potato reference genome (version 4.03) [28, 43]. The sequences were retrieved from the SPUD data base [44]. Primer sequences are underlined and the SNPs previously reported for tetraploid potatoes are highlighted in yellow. Exonic regions are represented with red letters while introns are represented in black letters according to the gene models from the SPUD data base [44]. (DOCX 26 kb)
  1 in total

1.  Novel SNP markers in InvGE and SssI genes are associated with natural variation of sugar contents and frying color in Solanum tuberosum Group Phureja.

Authors:  Diana Duarte-Delgado; Deissy Juyó; Christiane Gebhardt; Felipe Sarmiento; Teresa Mosquera-Vásquez
Journal:  BMC Genet       Date:  2017-03-09       Impact factor: 2.797

  1 in total
  1 in total

1.  Genomic regions associated with physiological, biochemical and yield-related responses under water deficit in diploid potato at the tuber initiation stage revealed by GWAS.

Authors:  Paula Díaz; Felipe Sarmiento; Boby Mathew; Agim Ballvora; Teresa Mosquera Vásquez
Journal:  PLoS One       Date:  2021-11-08       Impact factor: 3.240

  1 in total

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