Literature DB >> 29057378

Systems biology in the central nervous system: a brief perspective on essential recent advancements.

Joseph D Dougherty1,2, Chengran Yang1,2, Allison M Lake1,2.   

Abstract

As recent advances in human genetics have begun to more rapidly identify the individual genes contributing to risk of psychiatric disease, the spotlight now turns to understanding how disruption of these genes alters the brain, and thus behavior. Compared to other tissues, cellular complexity in the brain provides both a substantial challenge and a significant opportunity for systems biology approaches. Current methods are maturing that will allow for finally defining the 'parts list' for the functioning mouse and human brains, enabling new approaches to defining how the system goes awry in disorders of the CNS. However, the availability of tissue is certainly a challenge for systems biology of neuroscience, compared to systems biology of other tissues, where biopsy is feasible. This challenge is particularly notable for disorders caused by extremely rare genetic variants. Thus computational and systems biology approaches, as well as precise experimental models by way of genome editing, will play key roles in defining mechanisms for disorders, and their individual symptoms, across varied genetic etiologies. Here, we highlight recent progress in neurogenetics, postmortem genomics, cell-type specific profiling, and precision modeling toward defining mechanisms in disease.

Entities:  

Year:  2017        PMID: 29057378      PMCID: PMC5648337          DOI: 10.1016/j.coisb.2017.04.011

Source DB:  PubMed          Journal:  Curr Opin Syst Biol        ISSN: 2452-3100


  89 in total

Review 1.  Pharmacological treatment of Parkinson disease: a review.

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Journal:  JAMA       Date:  2014 Apr 23-30       Impact factor: 56.272

2.  A Multi-network Approach Identifies Protein-Specific Co-expression in Asymptomatic and Symptomatic Alzheimer's Disease.

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Journal:  Cell Syst       Date:  2016-12-15       Impact factor: 10.304

3.  Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons.

Authors:  Naomi Habib; Yinqing Li; Matthias Heidenreich; Lukasz Swiech; Inbal Avraham-Davidi; John J Trombetta; Cynthia Hession; Feng Zhang; Aviv Regev
Journal:  Science       Date:  2016-07-28       Impact factor: 47.728

4.  Neuronal subtype-specific genes that control corticospinal motor neuron development in vivo.

Authors:  Paola Arlotta; Bradley J Molyneaux; Jinhui Chen; Jun Inoue; Ryo Kominami; Jeffrey D Macklis
Journal:  Neuron       Date:  2005-01-20       Impact factor: 17.173

5.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

Review 6.  Neuroinflammation in Alzheimer's disease.

Authors:  Michael T Heneka; Monica J Carson; Joseph El Khoury; Gary E Landreth; Frederic Brosseron; Douglas L Feinstein; Andreas H Jacobs; Tony Wyss-Coray; Javier Vitorica; Richard M Ransohoff; Karl Herrup; Sally A Frautschy; Bente Finsen; Guy C Brown; Alexei Verkhratsky; Koji Yamanaka; Jari Koistinaho; Eicke Latz; Annett Halle; Gabor C Petzold; Terrence Town; Dave Morgan; Mari L Shinohara; V Hugh Perry; Clive Holmes; Nicolas G Bazan; David J Brooks; Stéphane Hunot; Bertrand Joseph; Nikolaus Deigendesch; Olga Garaschuk; Erik Boddeke; Charles A Dinarello; John C Breitner; Greg M Cole; Douglas T Golenbock; Markus P Kummer
Journal:  Lancet Neurol       Date:  2015-04       Impact factor: 44.182

7.  Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.

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Journal:  Nat Genet       Date:  2011-04-03       Impact factor: 38.330

8.  Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay.

Authors:  Alexandre Melnikov; Anand Murugan; Xiaolan Zhang; Tiberiu Tesileanu; Li Wang; Peter Rogov; Soheil Feizi; Andreas Gnirke; Curtis G Callan; Justin B Kinney; Manolis Kellis; Eric S Lander; Tarjei S Mikkelsen
Journal:  Nat Biotechnol       Date:  2012-02-26       Impact factor: 54.908

9.  Genome-wide significance testing of variation from single case exomes.

Authors:  Amy B Wilfert; Katherine R Chao; Madhurima Kaushal; Sanjay Jain; Sebastian Zöllner; David R Adams; Donald F Conrad
Journal:  Nat Genet       Date:  2016-10-24       Impact factor: 38.330

10.  A prospective evaluation of whole-exome sequencing as a first-tier molecular test in infants with suspected monogenic disorders.

Authors:  Zornitza Stark; Tiong Y Tan; Belinda Chong; Gemma R Brett; Patrick Yap; Maie Walsh; Alison Yeung; Heidi Peters; Dylan Mordaunt; Shannon Cowie; David J Amor; Ravi Savarirayan; George McGillivray; Lilian Downie; Paul G Ekert; Christiane Theda; Paul A James; Joy Yaplito-Lee; Monique M Ryan; Richard J Leventer; Emma Creed; Ivan Macciocca; Katrina M Bell; Alicia Oshlack; Simon Sadedin; Peter Georgeson; Charlotte Anderson; Natalie Thorne; Clara Gaff; Susan M White
Journal:  Genet Med       Date:  2016-03-03       Impact factor: 8.822

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  3 in total

Review 1.  Toward Model Building for Visual Aesthetic Perception.

Authors:  Jianli Liu; Edwin Lughofer; Xianyi Zeng
Journal:  Comput Intell Neurosci       Date:  2017-11-15

2.  The Dynamics of Concussion: Mapping Pathophysiology, Persistence, and Recovery With Causal-Loop Diagramming.

Authors:  Erin S Kenzie; Elle L Parks; Erin D Bigler; David W Wright; Miranda M Lim; James C Chesnutt; Gregory W J Hawryluk; Wayne Gordon; Wayne Wakeland
Journal:  Front Neurol       Date:  2018-04-04       Impact factor: 4.003

Review 3.  Inorganic Nanomaterials versus Polymer-Based Nanoparticles for Overcoming Neurodegeneration.

Authors:  Simona Martano; Valeria De Matteis; Mariafrancesca Cascione; Rosaria Rinaldi
Journal:  Nanomaterials (Basel)       Date:  2022-07-07       Impact factor: 5.719

  3 in total

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