Literature DB >> 29056483

Structure and Misfolding of the Flexible Tripartite Coiled-Coil Domain of Glaucoma-Associated Myocilin.

Shannon E Hill1, Elaine Nguyen1, Rebecca K Donegan1, Athéna C Patterson-Orazem1, Anthony Hazel2, James C Gumbart2, Raquel L Lieberman3.   

Abstract

Glaucoma-associated myocilin is a member of the olfactomedins, a protein family involved in neuronal development and human diseases. Molecular studies of the myocilin N-terminal coiled coil demonstrate a unique tripartite architecture: a Y-shaped parallel dimer-of-dimers with distinct tetramer and dimer regions. The structure of the dimeric C-terminal 7-heptad repeats elucidates an unexpected repeat pattern involving inter-strand stabilization by oppositely charged residues. Molecular dynamics simulations reveal an alternate accessible conformation in which the terminal inter-strand disulfide limits the extent of unfolding and results in a kinked configuration. By inference, full-length myocilin is also branched, with two pairs of C-terminal olfactomedin domains. Selected variants within the N-terminal region alter the apparent quaternary structure of myocilin but do so without compromising stability or causing aggregation. In addition to increasing our structural knowledge of naturally occurring extracellular coiled coils and biomedically important olfactomedins, this work broadens the scope of protein misfolding in the pathogenesis of myocilin-associated glaucoma.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  X-ray crystallography; chemical crosslinking; coiled coil; extracellular matrix; glaucoma; molecular dynamics simulations; protein design; protein misfolding; small-angle X-ray scattering; trabecular meshwork

Mesh:

Substances:

Year:  2017        PMID: 29056483      PMCID: PMC5685557          DOI: 10.1016/j.str.2017.09.008

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  74 in total

1.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

2.  Rescue of glaucoma-causing mutant myocilin thermal stability by chemical chaperones.

Authors:  J Nicole Burns; Susan D Orwig; Julia L Harris; J Derrick Watkins; Douglas Vollrath; Raquel L Lieberman
Journal:  ACS Chem Biol       Date:  2010-05-21       Impact factor: 5.100

3.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

4.  Extracellular myocilin affects activity of human trabecular meshwork cells.

Authors:  Kelly Wentz-Hunter; Ryo Kubota; Xiang Shen; Beatrice Y J T Yue
Journal:  J Cell Physiol       Date:  2004-07       Impact factor: 6.384

5.  Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles.

Authors:  Robert B Best; Xiao Zhu; Jihyun Shim; Pedro E M Lopes; Jeetain Mittal; Michael Feig; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2012-07-18       Impact factor: 6.006

6.  GLC1A mutations point to regions of potential functional importance on the TIGR/MYOC protein.

Authors:  F W Rozsa; S Shimizu; P R Lichter; A T Johnson; M I Othman; K Scott; C A Downs; T D Nguyen; J Polansky; J E Richards
Journal:  Mol Vis       Date:  1998-10-06       Impact factor: 2.367

7.  Founder TIGR/myocilin mutations for glaucoma in the Québec population.

Authors:  Mathieu Faucher; Jean-Louis Anctil; Marc-André Rodrigue; Annie Duchesne; Dan Bergeron; Pierre Blondeau; Gilles Côté; Stéphane Dubois; Josée Bergeron; Rose Arseneault; Jean Morissette; Vincent Raymond
Journal:  Hum Mol Genet       Date:  2002-09-01       Impact factor: 6.150

Review 8.  Olfactomedin domain-containing proteins: possible mechanisms of action and functions in normal development and pathology.

Authors:  Stanislav I Tomarev; Naoki Nakaya
Journal:  Mol Neurobiol       Date:  2009-06-26       Impact factor: 5.590

9.  Molecular Details of Olfactomedin Domains Provide Pathway to Structure-Function Studies.

Authors:  Shannon E Hill; Rebecca K Donegan; Elaine Nguyen; Tanay M Desai; Raquel L Lieberman
Journal:  PLoS One       Date:  2015-06-29       Impact factor: 3.240

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  13 in total

1.  Differential Misfolding Properties of Glaucoma-Associated Olfactomedin Domains from Humans and Mice.

Authors:  Athéna C Patterson-Orazem; Shannon E Hill; Yiming Wang; Iramofu M Dominic; Carol K Hall; Raquel L Lieberman
Journal:  Biochemistry       Date:  2019-03-12       Impact factor: 3.162

2.  Molecular architecture and modifications of full-length myocilin.

Authors:  Mackenzie D Martin; Dustin J E Huard; Ricardo C Guerrero-Ferreira; Ishani M Desai; Brett M Barlow; Raquel L Lieberman
Journal:  Exp Eye Res       Date:  2021-08-13       Impact factor: 3.770

3.  Epitope mapping of commercial antibodies that detect myocilin.

Authors:  Athéna C Patterson-Orazem; Shannon E Hill; Michael P Fautsch; Raquel L Lieberman
Journal:  Exp Eye Res       Date:  2018-05-09       Impact factor: 3.467

Review 4.  Common and rare myocilin variants: Predicting glaucoma pathogenicity based on genetics, clinical, and laboratory misfolding data.

Authors:  Hailee F Scelsi; Brett M Barlow; Emily G Saccuzzo; Raquel L Lieberman
Journal:  Hum Mutat       Date:  2021-06-24       Impact factor: 4.700

Review 5.  Molecular Insights into Myocilin and Its Glaucoma-Causing Misfolded Olfactomedin Domain Variants.

Authors:  Raquel L Lieberman; Minh Thu Ma
Journal:  Acc Chem Res       Date:  2021-04-13       Impact factor: 24.466

6.  Identification of myocilin as a blood plasma protein and analysis of its role in leukocyte adhesion to endothelial cell monolayers.

Authors:  José-Daniel Aroca-Aguilar; Ana Fernández-Navarro; Jesús Ontañón; Miguel Coca-Prados; Julio Escribano
Journal:  PLoS One       Date:  2018-12-17       Impact factor: 3.240

Review 7.  Antibodies Used to Detect Glaucoma-Associated Myocilin: More or Less Than Meets the Eye?

Authors:  Athéna C Patterson-Orazem; Raquel L Lieberman
Journal:  Invest Ophthalmol Vis Sci       Date:  2019-05-01       Impact factor: 4.799

8.  Knockout of myoc Provides Evidence for the Role of Myocilin in Zebrafish Sex Determination Associated with Wnt Signalling Downregulation.

Authors:  Raquel Atienzar-Aroca; José-Daniel Aroca-Aguilar; Susana Alexandre-Moreno; Jesús-José Ferre-Fernández; Juan-Manuel Bonet-Fernández; María-José Cabañero-Varela; Julio Escribano
Journal:  Biology (Basel)       Date:  2021-01-30

Review 9.  Myocilin-associated Glaucoma: A Historical Perspective and Recent Research Progress.

Authors:  Ritika Sharma; Abhinav Grover
Journal:  Mol Vis       Date:  2021-08-20       Impact factor: 2.367

Review 10.  Physiological function of myocilin and its role in the pathogenesis of glaucoma in the trabecular meshwork (Review).

Authors:  Hongwei Wang; Mingzhe Li; Zhenzhen Zhang; Haifeng Xue; Xing Chen; Yong Ji
Journal:  Int J Mol Med       Date:  2018-11-20       Impact factor: 4.101

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