Literature DB >> 29056481

Targeting the Late Stage of HIV-1 Entry for Antibody-Dependent Cellular Cytotoxicity: Structural Basis for Env Epitopes in the C11 Region.

William D Tolbert1, Neelakshi Gohain1, Nirmin Alsahafi2, Verna Van1, Chiara Orlandi3, Shilei Ding4, Loïc Martin5, Andrés Finzi6, George K Lewis3, Krishanu Ray7, Marzena Pazgier8.   

Abstract

Antibodies can have an impact on HIV-1 infection in multiple ways, including antibody-dependent cellular cytotoxicity (ADCC), a correlate of protection observed in the RV144 vaccine trial. One of the most potent ADCC-inducing epitopes on HIV-1 Env is recognized by the C11 antibody. Here, we present the crystal structure, at 2.9 Å resolution, of the C11-like antibody N12-i3, in a quaternary complex with the HIV-1 gp120, a CD4-mimicking peptide M48U1, and an A32-like antibody, N5-i5. Antibody N12-i3 recognizes an epitope centered on the N-terminal "eighth strand" of a critical β sandwich, which our analysis indicates to be emblematic of a late-entry state, after the gp120 detachment. In prior entry states, this sandwich comprises only seven strands, with the eighth strand instead pairing with a portion of the gp120 C terminus. The conformational gymnastics of HIV-1 gp120 thus includes altered β-strand pairing, possibly to reduce immunogenicity, although nevertheless still recognized by the human immune system.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  C11 epitope region; C11-like antibody; HIV-1 entry; N12-i3 antibody; antibody-dependent cellular cytotoxicity (ADCC); cluster A epitopes; crystal structure

Mesh:

Substances:

Year:  2017        PMID: 29056481      PMCID: PMC5677539          DOI: 10.1016/j.str.2017.09.009

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  60 in total

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Journal:  J Virol       Date:  2000-12       Impact factor: 5.103

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3.  Antibody-dependent cellular cytotoxicity-mediating antibodies from an HIV-1 vaccine efficacy trial target multiple epitopes and preferentially use the VH1 gene family.

Authors:  Mattia Bonsignori; Justin Pollara; M Anthony Moody; Michael D Alpert; Xi Chen; Kwan-Ki Hwang; Peter B Gilbert; Ying Huang; Thaddeus C Gurley; Daniel M Kozink; Dawn J Marshall; John F Whitesides; Chun-Yen Tsao; Jaranit Kaewkungwal; Sorachai Nitayaphan; Punnee Pitisuttithum; Supachai Rerks-Ngarm; Jerome H Kim; Nelson L Michael; Georgia D Tomaras; David C Montefiori; George K Lewis; Anthony DeVico; David T Evans; Guido Ferrari; Hua-Xin Liao; Barton F Haynes
Journal:  J Virol       Date:  2012-08-15       Impact factor: 5.103

4.  An HIV-1 gp120 envelope human monoclonal antibody that recognizes a C1 conformational epitope mediates potent antibody-dependent cellular cytotoxicity (ADCC) activity and defines a common ADCC epitope in human HIV-1 serum.

Authors:  Guido Ferrari; Justin Pollara; Daniel Kozink; Tiara Harms; Mark Drinker; Stephanie Freel; M Anthony Moody; S Munir Alam; Georgia D Tomaras; Christina Ochsenbauer; John C Kappes; George M Shaw; James A Hoxie; James E Robinson; Barton F Haynes
Journal:  J Virol       Date:  2011-05-04       Impact factor: 5.103

5.  Antibody neutralization and escape by HIV-1.

Authors:  Xiping Wei; Julie M Decker; Shuyi Wang; Huxiong Hui; John C Kappes; Xiaoyun Wu; Jesus F Salazar-Gonzalez; Maria G Salazar; J Michael Kilby; Michael S Saag; Natalia L Komarova; Martin A Nowak; Beatrice H Hahn; Peter D Kwong; George M Shaw
Journal:  Nature       Date:  2003-03-20       Impact factor: 49.962

6.  Antibodies to CD4-induced sites in HIV gp120 correlate with the control of SHIV challenge in macaques vaccinated with subunit immunogens.

Authors:  Anthony DeVico; Timothy Fouts; George K Lewis; Robert C Gallo; Karla Godfrey; Manhattan Charurat; Ilia Harris; Lindsey Galmin; Ranajit Pal
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-23       Impact factor: 11.205

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Authors:  Gabriel Ozorowski; Jesper Pallesen; Natalia de Val; Dmitry Lyumkis; Christopher A Cottrell; Jonathan L Torres; Jeffrey Copps; Robyn L Stanfield; Albert Cupo; Pavel Pugach; John P Moore; Ian A Wilson; Andrew B Ward
Journal:  Nature       Date:  2017-07-12       Impact factor: 49.962

8.  Limited neutralizing antibody specificities drive neutralization escape in early HIV-1 subtype C infection.

Authors:  Penny L Moore; Nthabeleng Ranchobe; Bronwen E Lambson; Elin S Gray; Eleanor Cave; Melissa-Rose Abrahams; Gama Bandawe; Koleka Mlisana; Salim S Abdool Karim; Carolyn Williamson; Lynn Morris
Journal:  PLoS Pathog       Date:  2009-09-18       Impact factor: 6.823

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  22 in total

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Authors:  Donald N Forthal; Andrés Finzi
Journal:  AIDS       Date:  2018-11-13       Impact factor: 4.177

2.  Two Families of Env Antibodies Efficiently Engage Fc-Gamma Receptors and Eliminate HIV-1-Infected Cells.

Authors:  Sai Priya Anand; Jérémie Prévost; Sophie Baril; Jonathan Richard; Halima Medjahed; Jean-Philippe Chapleau; William D Tolbert; Sharon Kirk; Amos B Smith; Bruce D Wines; Stephen J Kent; P Mark Hogarth; Matthew S Parsons; Marzena Pazgier; Andrés Finzi
Journal:  J Virol       Date:  2019-01-17       Impact factor: 5.103

3.  CD4 Incorporation into HIV-1 Viral Particles Exposes Envelope Epitopes Recognized by CD4-Induced Antibodies.

Authors:  Shilei Ding; Romain Gasser; Gabrielle Gendron-Lepage; Halima Medjahed; William D Tolbert; Joseph Sodroski; Marzena Pazgier; Andrés Finzi
Journal:  J Virol       Date:  2019-10-29       Impact factor: 5.103

4.  Stabilizing the HIV-1 envelope glycoprotein State 2A conformation.

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5.  Envelope glycoproteins sampling states 2/3 are susceptible to ADCC by sera from HIV-1-infected individuals.

Authors:  Jérémie Prévost; Jonathan Richard; Shilei Ding; Beatriz Pacheco; Roxanne Charlebois; Beatrice H Hahn; Daniel E Kaufmann; Andrés Finzi
Journal:  Virology       Date:  2017-12-15       Impact factor: 3.616

6.  Antigen-Induced Allosteric Changes in a Human IgG1 Fc Increase Low-Affinity Fcγ Receptor Binding.

Authors:  Chiara Orlandi; Daniel Deredge; Krishanu Ray; Neelakshi Gohain; William Tolbert; Anthony L DeVico; Patrick Wintrode; Marzena Pazgier; George K Lewis
Journal:  Structure       Date:  2020-03-24       Impact factor: 5.006

7.  Modulating HIV-1 envelope glycoprotein conformation to decrease the HIV-1 reservoir.

Authors:  Jyothi K Rajashekar; Jonathan Richard; Jagadish Beloor; Jérémie Prévost; Sai Priya Anand; Guillaume Beaudoin-Bussières; Liang Shan; Dietmar Herndler-Brandstetter; Gabrielle Gendron-Lepage; Halima Medjahed; Catherine Bourassa; Fleur Gaudette; Irfan Ullah; Kelly Symmes; Andrew Peric; Emily Lindemuth; Frederic Bibollet-Ruche; Jun Park; Hung-Ching Chen; Daniel E Kaufmann; Beatrice H Hahn; Joseph Sodroski; Marzena Pazgier; Richard A Flavell; Amos B Smith; Andrés Finzi; Priti Kumar
Journal:  Cell Host Microbe       Date:  2021-05-20       Impact factor: 31.316

8.  Application of area scaling analysis to identify natural killer cell and monocyte involvement in the GranToxiLux antibody dependent cell-mediated cytotoxicity assay.

Authors:  Justin Pollara; Chiara Orlandi; Charles Beck; R Whitney Edwards; Yi Hu; Shuying Liu; Shixia Wang; Richard A Koup; Thomas N Denny; Shan Lu; Georgia D Tomaras; Anthony DeVico; George K Lewis; Guido Ferrari
Journal:  Cytometry A       Date:  2018-03-02       Impact factor: 4.355

9.  HIV-1 gp120-CD4-Induced Antibody Complex Elicits CD4 Binding Site-Specific Antibody Response in Mice.

Authors:  Andrey Galkin; Yajing Chen; Javier Guenaga; Sijy O'Dell; Roderico Acevedo; James J Steinhardt; Yimeng Wang; Richard Wilson; Chi-I Chiang; Nicole Doria-Rose; Alexander V Grishaev; John R Mascola; Yuxing Li
Journal:  J Immunol       Date:  2020-02-17       Impact factor: 5.426

10.  Uninfected Bystander Cells Impact the Measurement of HIV-Specific Antibody-Dependent Cellular Cytotoxicity Responses.

Authors:  Jonathan Richard; Jérémie Prévost; Amy E Baxter; Benjamin von Bredow; Shilei Ding; Halima Medjahed; Gloria G Delgado; Nathalie Brassard; Christina M Stürzel; Frank Kirchhoff; Beatrice H Hahn; Matthew S Parsons; Daniel E Kaufmann; David T Evans; Andrés Finzi
Journal:  mBio       Date:  2018-03-20       Impact factor: 7.867

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