Literature DB >> 29053796

Exome sequencing and network analysis identifies shared mechanisms underlying spinocerebellar ataxia.

Esther A R Nibbeling1, Anna Duarri1, Corien C Verschuuren-Bemelmans1, Michiel R Fokkens1, Juha M Karjalainen1, Cleo J L M Smeets1, Jelkje J de Boer-Bergsma1, Gerben van der Vries1, Dennis Dooijes2, Giovana B Bampi1, Cleo van Diemen1, Ewout Brunt3, Elly Ippel2, Berry Kremer3, Monique Vlak4, Noam Adir5, Cisca Wijmenga1, Bart P C van de Warrenburg6, Lude Franke1, Richard J Sinke1, Dineke S Verbeek1.   

Abstract

The autosomal dominant cerebellar ataxias, referred to as spinocerebellar ataxias in genetic nomenclature, are a rare group of progressive neurodegenerative disorders characterized by loss of balance and coordination. Despite the identification of numerous disease genes, a substantial number of cases still remain without a genetic diagnosis. Here, we report five novel spinocerebellar ataxia genes, FAT2, PLD3, KIF26B, EP300, and FAT1, identified through a combination of exome sequencing in genetically undiagnosed families and targeted resequencing of exome candidates in a cohort of singletons. We validated almost all genes genetically, assessed damaging effects of the gene variants in cell models and further consolidated a role for several of these genes in the aetiology of spinocerebellar ataxia through network analysis. Our work links spinocerebellar ataxia to alterations in synaptic transmission and transcription regulation, and identifies these as the main shared mechanisms underlying the genetically diverse spinocerebellar ataxia types.
© The Author (2017). Published by Oxford University Press on behalf of the Guarantors of Brain. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  genetic network; neurodegeneration; spinocerebellar ataxia; synaptic transmission; whole exome sequencing

Mesh:

Substances:

Year:  2017        PMID: 29053796     DOI: 10.1093/brain/awx251

Source DB:  PubMed          Journal:  Brain        ISSN: 0006-8950            Impact factor:   13.501


  40 in total

1.  PLD3 and spinocerebellar ataxia.

Authors:  Adriana Carolina Gonzalez; Stijn Stroobants; Pia Reisdorf; Amanda Lee Gavin; David Nemazee; Dominik Schwudke; Rudi D'Hooge; Paul Saftig; Markus Damme
Journal:  Brain       Date:  2018-11-01       Impact factor: 13.501

Review 2.  Spinocerebellar ataxias: prospects and challenges for therapy development.

Authors:  Tetsuo Ashizawa; Gülin Öz; Henry L Paulson
Journal:  Nat Rev Neurol       Date:  2018-10       Impact factor: 42.937

3.  Paradigm for disease deconvolution in rare neurodegenerative disorders in Indian population: insights from studies in cerebellar ataxias.

Authors:  Renu Kumari; Deepak Kumar; Samir K Brahmachari; Achal K Srivastava; Mohammed Faruq; Mitali Mukerji
Journal:  J Genet       Date:  2018-07       Impact factor: 1.166

4.  De novo variant in KIF26B is associated with pontocerebellar hypoplasia with infantile spinal muscular atrophy.

Authors:  Monica H Wojcik; Kyoko Okada; Sanjay P Prabhu; Dan W Nowakowski; Keri Ramsey; Chris Balak; Sampath Rangasamy; Catherine A Brownstein; Klaus Schmitz-Abe; Julie S Cohen; Ali Fatemi; Jiahai Shi; Ellen P Grant; Vinodh Narayanan; Hsin-Yi Henry Ho; Pankaj B Agrawal
Journal:  Am J Med Genet A       Date:  2018-08-27       Impact factor: 2.802

5.  Neurexin and frizzled intercept axonal transport at microtubule minus ends to control synapse formation.

Authors:  Santiago Balseiro-Gómez; Junhyun Park; Yang Yue; Chen Ding; Lin Shao; Selim Ҫetinkaya; Caroline Kuzoian; Marc Hammarlund; Kristen J Verhey; Shaul Yogev
Journal:  Dev Cell       Date:  2022-07-08       Impact factor: 13.417

6.  Collaborative science unites researchers and a novel spastic ataxia gene.

Authors:  Brent L Fogel
Journal:  Ann Neurol       Date:  2018-06       Impact factor: 10.422

7.  Ataxia telangiectasia alters the ApoB and reelin pathway.

Authors:  Júlia Canet-Pons; Ralf Schubert; Ruth Pia Duecker; Roland Schrewe; Sandra Wölke; Matthias Kieslich; Martina Schnölzer; Andreas Chiocchetti; Georg Auburger; Stefan Zielen; Uwe Warnken
Journal:  Neurogenetics       Date:  2018-10-21       Impact factor: 2.660

8.  A diagnostic ceiling for exome sequencing in cerebellar ataxia and related neurological disorders.

Authors:  Kathie J Ngo; Jessica E Rexach; Hane Lee; Lauren E Petty; Susan Perlman; Juliana M Valera; Joshua L Deignan; Yuanming Mao; Mamdouh Aker; Jennifer E Posey; Shalini N Jhangiani; Zeynep H Coban-Akdemir; Eric Boerwinkle; Donna Muzny; Alexandra B Nelson; Sharon Hassin-Baer; Gemma Poke; Katherine Neas; Michael D Geschwind; Wayne W Grody; Richard Gibbs; Daniel H Geschwind; James R Lupski; Jennifer E Below; Stanley F Nelson; Brent L Fogel
Journal:  Hum Mutat       Date:  2019-11-25       Impact factor: 4.700

Review 9.  Fluorescence-based techniques for the detection of the oligomeric status of proteins: implication in amyloidogenic diseases.

Authors:  Lipika Mirdha; Hirak Chakraborty
Journal:  Eur Biophys J       Date:  2021-02-09       Impact factor: 1.733

10.  Case Report: A Homozygous Mutation (p.Y62X) of Phospholipase D3 May Lead to a New Leukoencephalopathy Syndrome.

Authors:  Yi-Hui Liu; Hai-Feng Zhang; Jie-Yuan Jin; Yan-Qiu Wei; Chen-Yu Wang; Liang-Liang Fan; Lv Liu
Journal:  Front Aging Neurosci       Date:  2021-06-29       Impact factor: 5.750

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