Literature DB >> 29046865

Measuring Aggregation of Events about a Mass Using Spatial Point Pattern Methods.

Michael O Smith1, Jackson Ball2,3, Benjamin B Holloway2,3, Ferenc Erdelyi4, Gabor Szabo4, Emily Stone1,2, Jonathan Graham1, J Josh Lawrence2,3.   

Abstract

We present a methodology that detects event aggregation about a mass surface using 3-dimensional study regions with a point pattern and a mass present. The Aggregation about a Mass function determines aggregation, randomness, or repulsion of events with respect to the mass surface. Our method closely resembles Ripley's K function but is modified to discern the pattern about the mass surface. We briefly state the definition and derivation of Ripley's K function and explain how the Aggregation about a Mass function is different. We develop the novel function according to the definition: the Aggregation about a Mass function times the intensity is the expected number of events within a distance h of a mass. Special consideration of edge effects is taken in order to make the function invariant to the location of the mass within the study region. Significance of aggregation or repulsion is determined using simulation envelopes. A simulation study is performed to inform researchers how the Aggregation about a Mass function performs under different types of aggregation. Finally, we apply the Aggregation about a Mass function to neuroscience as a novel analysis tool by examining the spatial pattern of neurotransmitter release sites as events about a neuron.

Entities:  

Keywords:  3-Dimensions; Clustering; Point Process; Spatial Patterns; Spatial Statistics

Year:  2015        PMID: 29046865      PMCID: PMC5642986          DOI: 10.1016/j.spasta.2015.05.004

Source DB:  PubMed          Journal:  Spat Stat


  21 in total

Review 1.  Nonsynaptic communication in the central nervous system.

Authors:  E Sylvester Vizi; Janos P Kiss; Balazs Lendvai
Journal:  Neurochem Int       Date:  2004-09       Impact factor: 3.921

2.  Preferential origin and layer destination of GAD65-GFP cortical interneurons.

Authors:  Guillermina López-Bendito; Katherine Sturgess; Ferenc Erdélyi; Gábor Szabó; Zoltán Molnár; Ole Paulsen
Journal:  Cereb Cortex       Date:  2004-04-27       Impact factor: 5.357

Review 3.  Cholinergic modulation of cortical function.

Authors:  M E Hasselmo; L M Giocomo
Journal:  J Mol Neurosci       Date:  2006       Impact factor: 3.444

4.  Nanoscale organization of nicotinic acetylcholine receptors revealed by stimulated emission depletion microscopy.

Authors:  R R Kellner; C J Baier; K I Willig; S W Hell; F J Barrantes
Journal:  Neuroscience       Date:  2006-10-16       Impact factor: 3.590

5.  Counting contacts between neurons in 3D in confocal laser scanning images.

Authors:  Floris G Wouterlood; Amber J Boekel; Riichi Kajiwara; Jeroen A M Beliën
Journal:  J Neurosci Methods       Date:  2008-04-01       Impact factor: 2.390

6.  Cholinergic innervation and calretinin-immunoreactive neurones in the hippocampus during postnatal development of the rat brain.

Authors:  Beata Ludkiewicz; Sławomir Wójcik; Edyta Spodnik; Beata Domaradzka-Pytel; Janusz Moryś
Journal:  Folia Morphol (Warsz)       Date:  2002       Impact factor: 1.183

7.  Projections from basal forebrain to prefrontal cortex comprise cholinergic, GABAergic and glutamatergic inputs to pyramidal cells or interneurons.

Authors:  Pablo Henny; Barbara E Jones
Journal:  Eur J Neurosci       Date:  2008-02       Impact factor: 3.386

8.  Cholinergic innervation of hippocampal GAD- and somatostatin-immunoreactive commissural neurons.

Authors:  C Léránth; M Frotscher
Journal:  J Comp Neurol       Date:  1987-07-01       Impact factor: 3.215

9.  RipleyGUI: software for analyzing spatial patterns in 3D cell distributions.

Authors:  Kristin Hansson; Mehrdad Jafari-Mamaghani; Patrik Krieger
Journal:  Front Neuroinform       Date:  2013-04-09       Impact factor: 4.081

10.  Analysis of the spatial organization of molecules with robust statistics.

Authors:  Thibault Lagache; Gabriel Lang; Nathalie Sauvonnet; Jean-Christophe Olivo-Marin
Journal:  PLoS One       Date:  2013-12-04       Impact factor: 3.240

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