Literature DB >> 29046739

High-quality-draft genomic sequence of Paenibacillus ferrarius CY1T with the potential to bioremediate Cd, Cr and Se contamination.

Jingxin Li1, Wei Guo1, Manman Shi1, Yajing Cao1, Gejiao Wang1.   

Abstract

Paenibacillus ferrarius CY1T (= KCTC 33419T = CCTCC AB2013369T) is a Gram-positive, aerobic, endospore-forming, motile and rod-shaped bacterium isolated from iron mineral soil. This bacterium reduces sulfate (SO42-) to S2-, which reacts with Cd(II) to generate precipitated CdS. It also reduces the toxic chromate [Cr(VI)] and selenite [Se(VI)] to the less bioavailable chromite [Cr(III)] and selenium (Se0), respectively. Thus, strain CY1T has the potential to bioremediate Cd, Cr and Se contamination, which is the main reason for the interest in sequencing its genome. Here we describe the features of strain CY1T, together with the draft genome sequence and its annotation. The 9,184,169 bp long genome exhibits a G + C content of 45.6%, 7909 protein-coding genes and 81 RNA genes. Nine putative Se(IV)-reducing genes, five putative Cr(VI) reductase and nine putative sulfate-reducing genes were identified in the genome.

Entities:  

Keywords:  Cadmium; Chromate-reducing bacterium; Genome sequence; Paenibacillus ferrarius; Selenite-reducing bacterium

Year:  2017        PMID: 29046739      PMCID: PMC5634878          DOI: 10.1186/s40793-017-0273-z

Source DB:  PubMed          Journal:  Stand Genomic Sci        ISSN: 1944-3277


  41 in total

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Journal:  Environ Sci Technol       Date:  2015-05-08       Impact factor: 9.028

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Authors:  C Xu; T Zhou; M Kuroda; B P Rosen
Journal:  J Biochem       Date:  1998-01       Impact factor: 3.387

5.  Expression and regulation of the arsenic resistance operon of Acidiphilium multivorum AIU 301 plasmid pKW301 in Escherichia coli.

Authors:  K Suzuki; N Wakao; T Kimura; K Sakka; K Ohmiya
Journal:  Appl Environ Microbiol       Date:  1998-02       Impact factor: 4.792

6.  Optimization and characterization of polysaccharide-based bioflocculant produced by Paenibacillus elgii B69 and its application in wastewater treatment.

Authors:  Ou Li; Cui Lu; Ao Liu; Liang Zhu; Pin-Mei Wang; Chao-Dong Qian; Xin-Hang Jiang; Xue-Chang Wu
Journal:  Bioresour Technol       Date:  2013-02-09       Impact factor: 9.642

7.  Paenibacillus thermophilus sp. nov., a novel bacterium isolated from a sediment of hot spring in Fujian province, China.

Authors:  Yu Zhou; Sheng Gao; Da-Qiao Wei; Ling-Ling Yang; Xing Huang; Jie He; Yun-Jiao Zhang; Shu-Kun Tang; Wen-Jun Li
Journal:  Antonie Van Leeuwenhoek       Date:  2012-06-10       Impact factor: 2.271

8.  Insights into the structure, solvation, and mechanism of ArsC arsenate reductase, a novel arsenic detoxification enzyme.

Authors:  P Martin; S DeMel; J Shi; T Gladysheva; D L Gatti; B P Rosen; B F Edwards
Journal:  Structure       Date:  2001-11       Impact factor: 5.006

Review 9.  Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review.

Authors:  A K Haritash; C P Kaushik
Journal:  J Hazard Mater       Date:  2009-04-07       Impact factor: 10.588

10.  OrthoMCL: identification of ortholog groups for eukaryotic genomes.

Authors:  Li Li; Christian J Stoeckert; David S Roos
Journal:  Genome Res       Date:  2003-09       Impact factor: 9.043

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