| Literature DB >> 29043520 |
Dorret I Boomsma1,2,3, Quinta Helmer4, Harold A Nieuwboer4, Jouke Jan Hottenga4,5, Marleen H de Moor5,6, Stéphanie M van den Berg7, Gareth E Davies8, Jacqueline M Vink9, Maarten J Schouten4, Conor V Dolan4,5, Gonneke Willemsen4,5, Meike Bartels4,5, Toos C E M van Beijsterveldt4, Lannie Ligthart4,5, Eco J de Geus4,5.
Abstract
For the participants in the Netherlands Twin Register (NTR) we constructed the extended pedigrees which specify all relations among nuclear and larger twin families in the register. A total of 253,015 subjects from 58,645 families were linked to each other, to the degree that we had information on the relations among participants. We describe the algorithm that was applied to construct the pedigrees. For > 30,000 adolescent and adult NTR participants data were available on harmonized neuroticism scores. We analyzed these data in the Mendel software package (Lange et al., Bioinformatics 29(12):1568-1570, 2013) to estimate the contributions of additive and non-additive genetic factors. In contrast to much of the earlier work based on twin data rather than on extended pedigrees, we could also estimate the contribution of shared household effects in the presence of non-additive genetic factors. The estimated broad-sense heritability of neuroticism was 47%, with almost equal contributions of additive and non-additive (dominance) genetic factors. A shared household effect explained 13% and unique environmental factors explained the remaining 40% of the variance in neuroticism.Entities:
Keywords: Extended twin-family design; Genetic non-additivity; Heritability; Netherlands Twin Register; Neuroticism; Pedigree analysis; Shared household effect
Mesh:
Year: 2017 PMID: 29043520 PMCID: PMC5752751 DOI: 10.1007/s10519-017-9872-0
Source DB: PubMed Journal: Behav Genet ISSN: 0001-8244 Impact factor: 2.805
Fig. 1Specification of relations among NTR participants in the PANTER database for a nuclear family of two parents with MZ twin boys, below the specification of this pedigree in the MENDEL input file
Number of registered individuals in the Netherlands (excluding teachersa)
| NTR pedigrees | Neuroticism pedigrees | |
|---|---|---|
| Number of extended families | 58,645 | 9527 |
| Individuals | 253,015 registered | 36,639 (31,152 phenotyped) |
| MZ male (individuals) | 13,268 | 2451 |
| MZ female (individuals) | 16,387 | 4904 |
| MZ (individualsb) |
| 7355 |
| DZ male (individuals) | 33,860 | 3163 |
| DZ female (individuals) | 33,659 | 4625 |
| DZ (individuals) |
| 7788 |
| Unknown zygosity male (individuals) | 10,402 | 192 |
| Unknown zygosity female (individuals) | 10,588 | 390 |
| Unknown zygosity (individualsc) | 23,297 | 582 |
| Fathers | 57,010 | 5678 |
| Mothers | 57,872 | 5992 |
| Parentsd |
| 11,670 |
| Brothers | 7214 | 1586 |
| Sisters | 8369 | 2811 |
| Full sibs (non-twin individualse) |
| 4397 |
| Half-brothers | 167 | 29 |
| Half-sisters | 176 | 54 |
| Half-sibs (non-twin individualsf) |
| 83 |
| Spouse pairs with offspringg | 56,795 pairs | 5550 pairs |
| Spouse pairs without offspringh | 3089 pairs | 2556 pairs |
Bold numbers represent the total number of MZ and DZ twins, parents, sibs and half-sibs
aNTR also includes 21,478 teachers who provide data on twins; 622 double registrations and 135 individuals for whom the biological parents cannot be resolved. These were removed from the pedigree
bIncludes 2 MZ transgender individuals
cIncludes 2307 individuals of unknown gender
dParents: individuals with at least one offspring (7201 dummy parents are not counted)
eSix siblings of unknown sex
fHalf sibs: all individuals who (pairwise) share one biological parent; e.g. families with twins and one-half-sib are counted as one; families twins, one-half-sib en two full sibs are counted as three
gSpouse pairs with offspring: two persons with at least one offspring (dummy parents excluded)
hSpouse pairs without offspring: spouses without registered offspring or parents
Basic summary of familial correlations and their confidence intervals for neuroticism
| N Complete pairs | Correlation | 95 CI | Average age | |
|---|---|---|---|---|
| MZ twins | 2984 | .523 | .499–.545 | 30.1 |
| DZ twins | 3121 | .216 | .182–.248 | 27.2 |
| Siblings | 596 | .198 | .120–.271 | 38.3 |
| Father-twin1 | 3580 | .143 | .111–.174 | 53.5/23.6 (father/twin) |
| Mother-twin2 | 4232 | .163 | .133–.191 | 51.6/23.6 (mother/twin) |
| Parents of twins | 3847 | .162 | .131–.192 | 53.3/51.4 (father/mother) |
| Twin-spouse | 1845 | .053 | .007–.098 | 34.6/35.6 (twin/spouse) |
Parameter estimates (and SE) for variance components
| Model | Log-likelihood | Additive genetic variance | Dominance genetic variance | Shared household variance | Non-genetic (E) variance | Heritability (additive and dominance) | Householda |
|---|---|---|---|---|---|---|---|
| ADE plus household | − 13390.40 | 0.2449 (0.0145) | 0.1822 (0.0175) | 0.1210 (0.0100) | 0.3656 (0.0135) | 0.4271/0.9137 = 0.4674 | 0.1210/0.9137 = 0.1324 |
| ADE no household | − 13464.28 | 0.2455 (0.0134) | 0.1912 (0.0168) | – | 0.4761 (0.0109) | 0.4367/0.9128 = 0.4784 | – |
| AE plus household | − 13446.34 | 0.3454 (0.0111) | – | 0.1270 (0.0098) | 0.4460 (0.0129) | 0.3454/0.9184 = 0.3761 | 0.1270/0.9184 = 0.1383 |
Heritability and household columns give the proportion of variance explained by total genetic and household effects
aAll spouses and their offspring aged 18 years or less