Literature DB >> 29040673

Assimilation of 'omics' strategies to study the cuticle layer and suberin lamellae in plants.

Hagai Cohen1, Jedrzej Szymanski1, Asaph Aharoni1, Eva Dominguez2.   

Abstract

The assembly of the lipophilic cuticle layer and suberin lamellae, approximately 450 million years ago, was a major evolutionary development that enabled plants to colonize terrestrial habitats. The cuticle layer is composed of cutin polyester and embedded cuticular waxes, whereas the suberin lamellae consist of very long chain fatty acid derivatives, glycerol, and phenolics cross-linked with alkyl ferulate-embedded waxes. Due to their substantial biological roles in plant life, the mechanisms underlying the assembly of these structures have been extensively investigated. In the last decade, the introduction of 'omics' approaches, including genomics, transcriptomics, proteomics, and metabolomics, have been key in the identification of novel genetic and chemical elements involved in the formation and function of the cuticle layer and suberin lamellae. This review summarizes contemporary studies that utilized various large-scale, 'omics' strategies in combination with novel technologies to unravel how building blocks and polymers of these lipophilic barriers are made, and moreover linking structure to function along developmental programs and stress responses. We anticipate that the studies discussed here will inspire scientists studying lipophilic barriers to integrate complementary 'omics' approaches in their efforts to tackle as yet unresolved questions and engage the main challenges of the field to date.
© The Author 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  Cuticle layer; cuticular waxes; cutin; metabolic profiling; omics; proteomics; suberin lamellae; transcriptomics

Mesh:

Substances:

Year:  2017        PMID: 29040673     DOI: 10.1093/jxb/erx348

Source DB:  PubMed          Journal:  J Exp Bot        ISSN: 0022-0957            Impact factor:   6.992


  11 in total

Review 1.  Plant lipid transfer proteins: are we finally closing in on the roles of these enigmatic proteins?

Authors:  Johan Edqvist; Kristina Blomqvist; Jeroen Nieuwland; Tiina A Salminen
Journal:  J Lipid Res       Date:  2018-03-19       Impact factor: 5.922

Review 2.  The Multifaceted Roles of Fungal Cutinases during Infection.

Authors:  Gulab Chand Arya; Hagai Cohen
Journal:  J Fungi (Basel)       Date:  2022-02-18

3.  Apoplasmic barrier in the extrafloral nectary of Citharexylum myrianthum (Verbenaceae).

Authors:  Silvia Rodrigues Machado; Tatiane Maria Rodrigues
Journal:  Planta       Date:  2021-07-03       Impact factor: 4.116

4.  The plant cuticle: old challenges, new perspectives.

Authors:  Eva Domínguez; José A Heredia-Guerrero; Antonio Heredia
Journal:  J Exp Bot       Date:  2017-11-09       Impact factor: 6.992

Review 5.  Advances in Omics Approaches for Abiotic Stress Tolerance in Tomato.

Authors:  Juhi Chaudhary; Praveen Khatri; Pankaj Singla; Surbhi Kumawat; Anu Kumari; Vinaykumar R; Amit Vikram; Salesh Kumar Jindal; Hemant Kardile; Rahul Kumar; Humira Sonah; Rupesh Deshmukh
Journal:  Biology (Basel)       Date:  2019-11-25

Review 6.  Importance of suberin biopolymer in plant function, contributions to soil organic carbon and in the production of bio-derived energy and materials.

Authors:  Anne E Harman-Ware; Samuel Sparks; Bennett Addison; Udaya C Kalluri
Journal:  Biotechnol Biofuels       Date:  2021-03-20       Impact factor: 6.040

7.  Differential regulation of triterpene biosynthesis induced by an early failure in cuticle formation in apple.

Authors:  Luigi Falginella; Christelle M Andre; Sylvain Legay; Kui Lin-Wang; Andrew P Dare; Cecilia Deng; Ria Rebstock; Blue J Plunkett; Lindy Guo; Guido Cipriani; Richard V Espley
Journal:  Hortic Res       Date:  2021-04-01       Impact factor: 6.793

8.  Protuberances are organized distinct regions of long-term callus: histological and transcriptomic analyses in kiwifruit.

Authors:  Małgorzata Czernicka; Iwona Chłosta; Kinga Kęska; Małgorzata Kozieradzka-Kiszkurno; Mohib Abdullah; Marzena Popielarska-Konieczna
Journal:  Plant Cell Rep       Date:  2021-02-05       Impact factor: 4.570

Review 9.  The Plant Cuticle: An Ancient Guardian Barrier Set Against Long-Standing Rivals.

Authors:  Gulab Chand Arya; Sutanni Sarkar; Ekaterina Manasherova; Asaph Aharoni; Hagai Cohen
Journal:  Front Plant Sci       Date:  2021-06-25       Impact factor: 5.753

10.  Integrated Metabolomic and Transcriptomic Analysis to Characterize Cutin Biosynthesis between Low- and High-Cutin Genotypes of Capsicum chinense Jacq.

Authors:  Purushothaman Natarajan; Tolulope Abodunrin Akinmoju; Padma Nimmakayala; Carlos Lopez-Ortiz; Marleny Garcia-Lozano; Benjamin J Thompson; John Stommel; Umesh K Reddy
Journal:  Int J Mol Sci       Date:  2020-02-19       Impact factor: 5.923

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