Literature DB >> 29040563

Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes.

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Abstract

CAZypedia was initiated in 2007 to create a comprehensive, living encyclopedia of the carbohydrate-active enzymes (CAZymes) and associated carbohydrate-binding modules involved in the synthesis, modification and degradation of complex carbohydrates. CAZypedia is closely connected with the actively curated CAZy database, which provides a sequence-based foundation for the biochemical, mechanistic and structural characterization of these diverse proteins. Now celebrating its 10th anniversary online, CAZypedia is a successful example of dynamic, community-driven and expert-based biocuration. CAZypedia is an open-access resource available at URL http://www.cazypedia.org.
© The Author 2017. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  biocuration; bioinformatics; carbohydrate-active enzymes; glycobiology; glycoscience

Mesh:

Substances:

Year:  2018        PMID: 29040563     DOI: 10.1093/glycob/cwx089

Source DB:  PubMed          Journal:  Glycobiology        ISSN: 0959-6658            Impact factor:   4.313


  49 in total

1.  Adaptation of Syntenic Xyloglucan Utilization Loci of Human Gut Bacteroidetes to Polysaccharide Side Chain Diversity.

Authors:  Guillaume Déjean; Alexandra S Tauzin; Stuart W Bennett; A Louise Creagh; Harry Brumer
Journal:  Appl Environ Microbiol       Date:  2019-10-01       Impact factor: 4.792

2.  Chitin-Active Lytic Polysaccharide Monooxygenases Are Rare in Cellulomonas Species.

Authors:  James Li; Ethan D Goddard-Borger; Olanrewaju Raji; Hirak Saxena; Laleh Solhi; Yann Mathieu; Emma R Master; Warren W Wakarchuk; Harry Brumer
Journal:  Appl Environ Microbiol       Date:  2022-07-12       Impact factor: 5.005

3.  The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune.

Authors:  Ioana M Marian; Peter Jan Vonk; Ivan D Valdes; Kerrie Barry; Benedict Bostock; Akiko Carver; Chris Daum; Harry Lerner; Anna Lipzen; Hongjae Park; Margo B P Schuller; Martin Tegelaar; Andrew Tritt; Jeremy Schmutz; Jane Grimwood; Luis G Lugones; In-Geol Choi; Han A B Wösten; Igor V Grigoriev; Robin A Ohm
Journal:  mBio       Date:  2022-05-23       Impact factor: 7.786

4.  A GH115 α-glucuronidase structure reveals dimerization-mediated substrate binding and a proton wire potentially important for catalysis.

Authors:  Casper Wilkens; Marlene Vuillemin; Bo Pilgaard; Igor Polikarpov; Jens Preben Morth
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-04-20       Impact factor: 5.699

5.  Cloning and characterization of trehalase: a conserved glycosidase from oriental midge, Chironomus ramosus.

Authors:  Ekta Shukla; Leena Thorat; Ameya D Bendre; Santosh Jadhav; Jayanta K Pal; Bimalendu B Nath; Sushama M Gaikwad
Journal:  3 Biotech       Date:  2018-08-01       Impact factor: 2.406

6.  Development and Evaluation of GlycanDock: A Protein-Glycoligand Docking Refinement Algorithm in Rosetta.

Authors:  Morgan L Nance; Jason W Labonte; Jared Adolf-Bryfogle; Jeffrey J Gray
Journal:  J Phys Chem B       Date:  2021-06-16       Impact factor: 2.991

7.  Evolution of a major virion protein of the giant pandoraviruses from an inactivated bacterial glycoside hydrolase.

Authors:  Mart Krupovic; Natalya Yutin; Eugene Koonin
Journal:  Virus Evol       Date:  2020-11-30

Review 8.  Polyphenol-Mediated Gut Microbiota Modulation: Toward Prebiotics and Further.

Authors:  Maria Carolina Rodríguez-Daza; Elena C Pulido-Mateos; Joseph Lupien-Meilleur; Denis Guyonnet; Yves Desjardins; Denis Roy
Journal:  Front Nutr       Date:  2021-06-28

9.  METAnnotatorX2: a Comprehensive Tool for Deep and Shallow Metagenomic Data Set Analyses.

Authors:  Christian Milani; Gabriele Andrea Lugli; Federico Fontana; Leonardo Mancabelli; Giulia Alessandri; Giulia Longhi; Rosaria Anzalone; Alice Viappiani; Francesca Turroni; Douwe van Sinderen; Marco Ventura
Journal:  mSystems       Date:  2021-06-29       Impact factor: 6.496

10.  CAZyme prediction in ascomycetous yeast genomes guides discovery of novel xylanolytic species with diverse capacities for hemicellulose hydrolysis.

Authors:  Jonas L Ravn; Martin K M Engqvist; Johan Larsbrink; Cecilia Geijer
Journal:  Biotechnol Biofuels       Date:  2021-07-02       Impact factor: 6.040

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