Literature DB >> 29039042

Comparative responses of diazotrophic abundance and community structure to the chemical composition of paddy soil.

Meenakshi Srivastava1, Arun Kumar Mishra2.   

Abstract

Diazotrophy is considered as one of the most crucial and dynamic phenomena in the rice field and also a major source of nitrogen input. The objective of this study was to elucidate possible interactions between diverse and dominant diazotrophic bacterial community and organic carbon composition of the paddy soil. Our results suggest that most abundantly found diazotrophs belong to a proteobacteria group and uncultured bacterial forms. A gene abundance study clearly showed significantly higher diazotrophic abundance (P < 0.01) at Chandauli (CHN) as compared to Varanasi (VNS) and Ghazipur (GHJ) districts of Eastern Uttar Pradesh, India, with nitrogenase reductase (nifH) copy number between 1.44 × 103 and 3.34 × 103 copy g-1 soil. Fourier-transform infrared (FT-IR) spectroscopy data identified -CO-, C=O ([Formula: see text] and -NH-), [Formula: see text], and OH- as dominant organic functional groups in the paddy soil. Multivariate analysis was performed to get a clear and more accurate picture of interactions between free-living diazotrophs and abiotic soil factors. Regression analysis suggested a similar trend of distribution of different functional groups along each site. Relative abundance and diversity of diazotrophic population increased in response to FT-IR-based soil organic fractions. Maximum number of FT-IR spectral peak at sites in the Chandauli district augmented its bacterial diazotrophic diversity and abundance. Taken together, the present study sheds light on the substrate-driven composition of the microbial population of selected paddy areas.

Entities:  

Keywords:  DGGE; FT-IR; Network; Phylogeny; qRT-PCR

Mesh:

Substances:

Year:  2017        PMID: 29039042     DOI: 10.1007/s11356-017-0375-6

Source DB:  PubMed          Journal:  Environ Sci Pollut Res Int        ISSN: 0944-1344            Impact factor:   4.223


  38 in total

1.  Investigating microbial (micro)colony heterogeneity by vibrational spectroscopy.

Authors:  L P Choo-Smith; K Maquelin; T van Vreeswijk; H A Bruining; G J Puppels; N A Ngo Thi; C Kirschner; D Naumann; D Ami; A M Villa; F Orsini; S M Doglia; H Lamfarraj; G D Sockalingum; M Manfait; P Allouch; H P Endtz
Journal:  Appl Environ Microbiol       Date:  2001-04       Impact factor: 4.792

2.  Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice.

Authors:  Claudia Knief; Nathanaël Delmotte; Samuel Chaffron; Manuel Stark; Gerd Innerebner; Reiner Wassmann; Christian von Mering; Julia A Vorholt
Journal:  ISME J       Date:  2011-12-22       Impact factor: 10.302

3.  Development and application of real-time PCR assays for quantification of erm genes conferring resistance to macrolides-lincosamides-streptogramin B in livestock manure and manure management systems.

Authors:  Jing Chen; Zhongtang Yu; Frederick C Michel; Thomas Wittum; Mark Morrison
Journal:  Appl Environ Microbiol       Date:  2007-05-11       Impact factor: 4.792

4.  Nitrogen-fixing (acetylene redution) activity and population of aerobic heterotrophic nitrogen-fixing bacteria associated with wetland rice.

Authors:  I Watanabe; W L Barraquio; M R De Guzman; D A Cabrera
Journal:  Appl Environ Microbiol       Date:  1979-05       Impact factor: 4.792

5.  Using network analysis to explore co-occurrence patterns in soil microbial communities.

Authors:  Albert Barberán; Scott T Bates; Emilio O Casamayor; Noah Fierer
Journal:  ISME J       Date:  2011-09-08       Impact factor: 10.302

Review 6.  Microbial interactions: from networks to models.

Authors:  Karoline Faust; Jeroen Raes
Journal:  Nat Rev Microbiol       Date:  2012-07-16       Impact factor: 60.633

7.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

8.  Fourier transform-infrared spectroscopic methods for microbial ecology: analysis of bacteria, bacteria-polymer mixtures and biofilms.

Authors:  P D Nichols; J M Henson; J B Guckert; D E Nivens; D C White
Journal:  J Microbiol Methods       Date:  1985       Impact factor: 2.363

9.  Identification of species of Brucella using Fourier transform infrared spectroscopy.

Authors:  M A Miguel Gómez; M A Bratos Pérez; F J Martín Gil; A Dueñas Díez; J F Martín Rodríguez; P Gutiérrez Rodríguez; A Orduña Domingo; A Rodríguez Torres
Journal:  J Microbiol Methods       Date:  2003-10       Impact factor: 2.363

10.  Circadian rhythm of nitrogenase gene expression in the diazotrophic filamentous nonheterocystous cyanobacterium Trichodesmium sp. strain IMS 101.

Authors:  Y B Chen; B Dominic; M T Mellon; J P Zehr
Journal:  J Bacteriol       Date:  1998-07       Impact factor: 3.490

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